Glyma15g09160 - SoyBase

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Report for Sequence Feature Glyma15g09160

Feature Type:	gene_model
Chromosome:	Gm15
Start:	6509290
stop:	6510616
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g09160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02960	AT	Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein \| chr3:667245-668626 REVERSE LENGTH=246	SoyBase	E_val: 5.00E-69	ISS
GO:0006825	GO-bp	Annotation by Michelle Graham. GO Biological Process: copper ion transport	SoyBase	N/A	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1603	KOG	Copper chaperone	JGI		ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PTHR22814:SF52	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_I1MEU9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEU9_SOYBN	SoyBase	E_val: 4.00E-165	ISS
UniRef100_Q9M8T7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F13E7.9 protein n=1 Tax=Arabidopsis thaliana RepID=Q9M8T7_ARATH	SoyBase	E_val: 2.00E-66	ISS

Expression Patterns of Glyma15g09160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g09160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g085100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g09160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g09160

Limit To All Plant Sequences

>Glyma15g09160.1   sequence type=CDS   gene model=Glyma15g09160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGAATAACAAGGAGGAAAATTCCACCCAAAAAAAGAACAAGGAGGAAAAGAAGGAATCAGACAAGGCTGTTGTTTTGAAAGCACTCGTACATTGTGAAGGTTGCTCGAACCAAATTTCTAAGTGCTTGAAAGGTTTAGCTGGAGTGAGGCATGTTCAGGTTGATAGAGAACATCAAAGGGTCACTGTGAAAGGAGAAGTTGTGAATGATCCAGCGAAGGTTTTGGAAAGACTTCGAAAGAAATACAGCAAAAACGTTGAGTTAATTTCACCAAAACCAAAGCCTGAAAAACAGAAAAAAGCCGAAGAGAAAAAGGAACAGCCTAAAATCAAAATTGTGGTGCTTAAGATGTATATGCATTGCGAAGGCTGTGTAAGTGATGTCAAGAGAAAAATTGAGGAAATGGAAGGTGTTCATTCTGTGGAAGTGGACAAAGAAAAATCACGGGTCATGGTCAGAGGAACGATGGATTCAACAAAACTTGTTGAAAAAGTGAAGAAGAAACTGGGAAAGCATGTGGAGATCATTAAGGAAGACAATAAAAGAGAACCCAAAAGAGAAGGGAGTGATAATGAAAAAGGCAATGAAGATGTTAATGTTATTATGTATAGTTATCCTCCTCAATACTCTACCCAATATCTTTATCCCAATCAATCCTTTAGTGATGAAAACGTTTTTGCATGTTCAATAATGTAA

Predicted protein sequences of Glyma15g09160

Limit To All Plant Sequences

>Glyma15g09160.1   sequence type=predicted peptide   gene model=Glyma15g09160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRNNKEENSTQKKNKEEKKESDKAVVLKALVHCEGCSNQISKCLKGLAGVRHVQVDREHQRVTVKGEVVNDPAKVLERLRKKYSKNVELISPKPKPEKQKKAEEKKEQPKIKIVVLKMYMHCEGCVSDVKRKIEEMEGVHSVEVDKEKSRVMVRGTMDSTKLVEKVKKKLGKHVEIIKEDNKREPKREGSDNEKGNEDVNVIMYSYPPQYSTQYLYPNQSFSDENVFACSIM*

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