Glyma15g09130 - SoyBase

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Report for Sequence Feature Glyma15g09130

Feature Type:	gene_model
Chromosome:	Gm15
Start:	6490819
stop:	6493189
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g09130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18760	AT	Annotation by Michelle Graham. TAIR10: receptor like protein 51 \| chr4:10308163-10309458 REVERSE LENGTH=431	SoyBase	E_val: 4.00E-135	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF497	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_G7LJG3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7LJG3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MEU5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEU5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g09130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g09130

Paralog	Evidence	Comments
Glyma13g30000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g09130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g084800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g09130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g09130

Limit To All Plant Sequences

>Glyma15g09130.1   sequence type=CDS   gene model=Glyma15g09130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAATGAGATCATTAGCATTTGTTGTGATTCTGCTCCTTCTTTCACCCACCATTGTCAAATCTCTCTCCCTCCCTCATACTCCATCTCCATCTCCATCTCCATCTCCATCTCCTCCTTCCACATCATCCTCATCCACTTTGGACCCAAAACAAGCAACAGCCCTTGAATCCCTCAACTTCCCCACCTCAAAGGACCCCTGCGCCAAGCCCTCCTTCCACAATGCCACCCTCTGCGACGCCGCCAAGCCCTTCCGCCACCTCATCTCCCTCCGCCTCGCCAACTGCTCCTCCTACCTCTCCCTCTCCTTCACTGCCCTCAAGTCCCTCTCCACCCTCCGCTCCCTCTCCCTCCTCAACTGCCCCGTCACCCCCATCCGCCTCCCCGCCGACCTCGCCCTCTCCCTCACCTCCTTCACCTGCGTCAACAGCCTCCGCAAACTCTCCGGCGTCTGGCTCTCCAACCTCCAGAACCTCACCGACCTCACCGTCTCCGACGTCAACGTCAAAGCCTCCGGCCCCTTCGTCATCCTCGCCCGCATGACCAAGCTCCAAACCCTCACCATCTCCAACGCCAATCTCACCGGATCCCTCCCCGGCCACCTCCACTCCAACCTCACACACATCGATTTCTCCAATAACCGCCTCAAAGGCAACATTCCTCCTTCCATAACTATGCTCGACAGCCTCCAGTTTTTGAATCTCTCCTCTAACTCCCTCGCCGGAGAAATACCTGCTTCCATCGGTGACCTAATTTCACTCAAAAACCTCTCCCTCTCCTCCAACTCCTTCTCCGGTTCCATTCCTGATTCCGTATCTGCTTTACCGAGTTTGATTCACATGGATCTGAGCTCTAACCAGCTCAACGGCACCATACCCAAGTTCATTTCACAGATGAAGTCTCTTAAGCACCTGAATCTCGCCAACAACAACCTCCACGGGGTTGTGCCTTTTAACCTCTCTTTCATTAAGCGATTAGAAGTGTTCAAGGTTGGTGGCAACAGTAATCTTTGCTATAACCATTCCATGGTGTCTTCCAAGTTGAAGCTTGGGATCTCGCCCTGTGATAAGTTCGGAATGCCGGTCACTCCGCCGTCGAAGGATTCTTCTGCCGATGATAGCAGCGACGATGATTACGATGAGGGTGATGAGGAAGGGAGTAGGCACAAGAAGGAGCATCATCATGGACCTAACAAGTTTGTTCTTGGTGTCGCCATTGCGCTCTCTTCTATTGTCTTTCTCATTGTTTTCTTGATCCTCTGCTCCAAATGTTGTCGTTAA

Predicted protein sequences of Glyma15g09130

Limit To All Plant Sequences

>Glyma15g09130.1   sequence type=predicted peptide   gene model=Glyma15g09130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRMRSLAFVVILLLLSPTIVKSLSLPHTPSPSPSPSPSPPSTSSSSTLDPKQATALESLNFPTSKDPCAKPSFHNATLCDAAKPFRHLISLRLANCSSYLSLSFTALKSLSTLRSLSLLNCPVTPIRLPADLALSLTSFTCVNSLRKLSGVWLSNLQNLTDLTVSDVNVKASGPFVILARMTKLQTLTISNANLTGSLPGHLHSNLTHIDFSNNRLKGNIPPSITMLDSLQFLNLSSNSLAGEIPASIGDLISLKNLSLSSNSFSGSIPDSVSALPSLIHMDLSSNQLNGTIPKFISQMKSLKHLNLANNNLHGVVPFNLSFIKRLEVFKVGGNSNLCYNHSMVSSKLKLGISPCDKFGMPVTPPSKDSSADDSSDDDYDEGDEEGSRHKKEHHHGPNKFVLGVAIALSSIVFLIVFLILCSKCCR*

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