Report for Sequence Feature Glyma15g09120
Feature Type: gene_model
Chromosome: Gm15
Start: 6480006
stop: 6483851
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g09120
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G18750 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr4:10304850-10307465 FORWARD LENGTH=871
SoyBase E_val: 0 ISS
GO:0010087 GO-bp
Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis
SoyBase N/A ISS
GO:0010305 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation
SoyBase N/A ISS
GO:0010588 GO-bp
Annotation by Michelle Graham. GO Biological Process: cotyledon vascular tissue pattern formation
SoyBase N/A ISS
GO:0048366 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf development
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF49 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7LJG1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7LJG1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MEU4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MEU4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g09120
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma15g09120 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g084700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g09120
Coding sequences of Glyma15g09120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g09120.1 sequence type=CDS gene model=Glyma15g09120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGTTGACAATGGCGAAAAGCATAACGAACTTCGGCACCTACTCGACTTGTAACTGTCATACAAGTGAAGCCAACTATGCCAAACCTCGTAATTGTTTCATCTTCTTCCAACAACCTTCAAGAAAATACTTTTTATCTTCATACTTGGATGTTCCTCGTAGTAGCACTAGGGTCGGTGCCTTTGCCAAGTTGGACGAAAACACCAAAATTTGCAAATTCTGCGAGGTGGGTGATCTCAGAAATGCCGTGGAATTGCTCAGAATGTCCCAAAAATCGGAGCTTGACTTGAACGCTTACTCTTCTATCTTGCAGCTCTGTGCTGAGCACAAGTGTTTGCAAGAGGGTAAGATGGTTCATTCAGTTATCTCCTCCAATGGCATACCAATTGAAGGGGTTTTGGGTGCAAAACTAGTATTCATGTATGTGAGTTGTGGAGCTTTAAGAGAAGGGAGACGGATATTTGATCATATTCTCAGTGATAATAAGGTTTTTCTGTGGAATCTTATGATGTCTGAATACGCAAAGATTGGCGATTATCGTGAAAGTATATATCTTTTTAAGAAAATGCAGAAACTGGGAATTACAGGGAATTCTTATACGTTTTCATGTATCTTGAAGTGTTTTGCTACTTTGGGAAGGGTAGGCGAGTGTAAAAGAATCCATGGGTGTGTTTATAAACTGGGCTTTGGTTCTTATAATACTGTTGTTAACTCTCTAATTGCGACTTACTTCAAAAGTGGAGAAGTTGACAGTGCACACAAGTTGTTCGATGAATTGGGTGACCGAGATGTTGTGTCCTGGAATTCTATGATAAGTGGGTGTGTGATGAATGGTTTTTCCCACTCTGCACTTGAGTTTTTCGTTCAGATGCTCATTTTGAGGGTTGGTGTGGATTTGGCTACCTTGGTTAATTCTGTTGCGGCTTGTGCAAATGTTGGTAGTCTTTCATTGGGGAGAGCACTTCATGGACAAGGAGTGAAAGCTTGTTTTAGTAGGGAAGTTATGTTTAACAATACCTTACTAGACATGTATTCAAAATGTGGTAATTTAAATGACGCAATTCAAGCTTTTGAGAAGATGGGTCAAAAGACTGTTGTCTCTTGGACTTCATTAATTGCTGCTTATGTAAGAGAAGGTCTATATGATGATGCAATAAGGTTATTCTATGAAATGGAAAGCAAAGGGGTTAGTCCAGATGTTTATTCCATGACTAGTGTCCTTCATGCTTGCGCTTGTGGCAATTCATTGGATAAAGGAAGAGATGTACACAATTACATTAGAAAGAACAACATGGCCTTGTGCTTGCCTGTGTCTAATGCTCTCATGGATATGTATGCAAAATGTGGAAGCATGGAAGAAGCTTATTTAGTCTTCTCTCAAATTCCAGTTAAGGACATTGTCTCGTGGAATACCATGATTGGAGGTTATTCAAAAAACTCTCTTCCTAATGAAGCTCTTAAACTTTTTGCTGAGATGCAAAAAGAATCAAGACCTGATGGTATTACAATGGCTTGCTTACTTCCAGCTTGTGGAAGCCTAGCTGCTCTAGAGATAGGCAGAGGGATACATGGATGCATACTGAGAAATGGTTACTCATCAGAGTTGCATGTAGCTAATGCACTTATCGATATGTATGTAAAGTGTGGGTCACTAGTTCATGCACGATTGCTCTTTGATATGATTCCTGAGAAGGATTTGATCACTTGGACTGTTATGATTTCCGGGTGTGGCATGCATGGGCTTGGAAATGAAGCAATCGCCACTTTCCAAAAGATGAGGATTGCAGGTATTAAGCCTGATGAGATTACCTTCACTTCTATACTTTATGCTTGCAGTCATTCTGGATTACTGAATGAGGGGTGGGGATTTTTTAATTCTATGATAAGTGAATGCAACATGGAGCCCAAGTTAGAGCACTATGCTTGCATGGTAGATCTCCTGGCCCGCACTGGAAATCTTTCGAAGGCCTACAACTTAATCGAGACAATGCCAATTAAACCAGATGCTACAATTTGGGGTGCCTTGCTTTGTGGGTGCAGGATCCATCATGATGTGGAGCTAGCAGAAAAAGTGGCAGAGCATGTTTTTGAGCTAGAGCCAGACAACGCAGGATATTATGTACTTCTGGCCAACATCTATGCAGAGGCAGAAAAGTGGGAAGAAGTAAAGAAGTTACGCGAGAGGATTGGTAAGCGGGGACTAAAAAAGAGTCCAGGCTGTAGTTGGATAGAGGTCCAAGGAAAATTTACTACCTTTGTTTCTGCAGATACTGCACACCCTCAAGCCAAAAGTGACATGGAGAAGGAAGTAGCTTTGTGTGGGCACAGTGAGAAGTTAGCTATGGCTTTTGGTATATTAAATTTGCCGTCTGGGAGGACTATTAGGGTTGCCAAGAATCTACGAGTATGTGATGATTGTCACGAGATGGCAAAGTTCATGTCCAAGACAACCAGAAGGGAAATTATCTTGAGAGATTCAAATCGGTTTCACCATTTCAAGGATGGTTTCTGTTCTTGCAGAGATTTCTGGTAA
Predicted protein sequences of Glyma15g09120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g09120.1 sequence type=predicted peptide gene model=Glyma15g09120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLLTMAKSITNFGTYSTCNCHTSEANYAKPRNCFIFFQQPSRKYFLSSYLDVPRSSTRVGAFAKLDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
