SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05830 | AT | Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204 | SoyBase | E_val: 9.00E-29 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR23012 | Panther | MEMBRANE ASSOCIATED RING FINGER | JGI | ISS | |
| PTHR23012:SF31 | Panther | PUTATIVE UNCHARACTERIZED PROTEIN OSJNBB0036G09.1 ( | JGI | ISS | |
| UniRef100_D7LZ12 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LZ12_ARALL | SoyBase | E_val: 3.00E-26 | ISS |
| UniRef100_I1M1R9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M1R9_SOYBN | SoyBase | E_val: 1.00E-159 | ISS |
|
Glyma15g09110 not represented in the dataset |
Glyma15g09110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g30030 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g084600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g09110.2 sequence type=CDS gene model=Glyma15g09110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCAAAACACAAGCGAGGGAAGAGGTGAGGTATTGGGTCCGGTTTATGAAGGGGAAGATGGAAATTTGAGTAATTTGGTTGAAGGGGTTGTAGTTGTAATTGATGCTGTAGATGGGAACAGCTTGGGTGGAAGAGTTAGTATAAGTGAAGAAGCTGGAACTTCAGGAGAGGTTGGCAAGGATTTCGGATCTGATATGGAGCTAGAGGAGGGGATTGAGGAAGTTAAGGATCAGGACAATCATGATCAAGAAAATATCAGTGATGATAAATTGCTCGAGGTTGATCAGGGAACTAGTTATAATTCAAACCATTTGGTTAATCAAGTAGTGATTGAAACTGTGGTTGCAATTGAGTCTGTTCAGACTAAGTATGTCACTGAAGATAATAGGAAATTGGAAACAAAAGTTGATGAATCGGGGTTGAGCATGGTATCCATGAAAGCACCAGAAGGGGTGTCTGAAACTGATAAAGATTCACGTGTGATTGATATAAAGTGCAGCAGCTGCAAAAAGGTTTATGAGGATTCTGAAGGTGAAAGGGTTTGTAGGATTTGCCATCTGACTTCTGTGCAATCATCGGATGAAACAACTGTTGGCACCGCTAGTAGTGCTACAAGTGCAGACTTGATTCAGCTTGGTTGTGCTTGTAAAGATGAGCTAGGCATTGCACATGTTCATTGTGCTGAGGCGTGGTTCAAGCTTAAGGGGAACAGGTTATGTGAAATATGTGGTGAGACTGCAGAAAATGTTTCGGGTGTTACTAATTATGGATTTATGGAAAAGTGGAATGAAAGAAGATTCATGGACGACGATGGCAACTCATCCCACAGGTTTGGTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCATTTGTTCTGCCATGGTTTTTCCGTGTAAATATGTTCTAG
>Glyma15g09110.2 sequence type=predicted peptide gene model=Glyma15g09110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDQNTSEGRGEVLGPVYEGEDGNLSNLVEGVVVVIDAVDGNSLGGRVSISEEAGTSGEVGKDFGSDMELEEGIEEVKDQDNHDQENISDDKLLEVDQGTSYNSNHLVNQVVIETVVAIESVQTKYVTEDNRKLETKVDESGLSMVSMKAPEGVSETDKDSRVIDIKCSSCKKVYEDSEGERVCRICHLTSVQSSDETTVGTASSATSADLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGETAENVSGVTNYGFMEKWNERRFMDDDGNSSHRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
