Glyma15g09050 - SoyBase

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Report for Sequence Feature Glyma15g09050

Feature Type:	gene_model
Chromosome:	Gm15
Start:	6438749
stop:	6441948
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g09050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45800	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr5:18575765-18578972 REVERSE LENGTH=666	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF4	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_G7ZXK4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LRR receptor-like serine/threonine-protein kinase GSO1 n=1 Tax=Medicago truncatula RepID=G7ZXK4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MET9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MET9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g09050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g09050

Paralog	Evidence	Comments
Glyma13g30090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g09050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g084200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g09050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g09050

Limit To All Plant Sequences

>Glyma15g09050.1   sequence type=CDS   gene model=Glyma15g09050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCCCTTTTGCACATTCTTCATTCTTCTTTCGCTGCTTGTTATTCTCGTTGAATCTTCATGCAAAAACGAAGACCAGGAGATGGTGTCCAAGGCCTTCCAATCTGTGTCTGGATTCAACTCTTCCTGGTTCGAAACAGGTTCCAACTGTTCAAATGCTGAGATTAAAGGGATAAATCTTTCGTCCAAGAACCTAAGTGGGAACATCTCGTGGAAGTATCTGAGGAACATATCCAAGTTGAAGGTTCTAGATCTGTCTGGGAATTTTCTACAAGGCCAGGTCCCAAACTGGTTCTGGAGAAGCTCAACCTTATTGGTAGTGAACCTTTCCAGCAACAGGTTCGGAGGGAGCATTAACCCCACTTCCCAAAACGGTTCATTTTCATCACTGCAAAATCTCAATCTCTCACACAACAGGTTCACCAACCGGCTTCACCTCTCTGGTTTCTCAAACCTTGAAAGCCTCGACCTTTCGCACAACAACCTCGGAACCTTGCCCTCCGGGTTCCAAAACCTCACCAATCTACACCACCTCGATCTCTCCAACTGCAACATCAAAGGAAACGTAAAACCCATCTCCTCCCTCACCACACTCTCCTTCTTGGATTTATCAAATAACACGTTGAACGGTAGTTTCCCCTCTGATTTCCCTCCCCTGAACAACATCAAATTCTTGAACGTCTCCCACAACAACCTCAAAGCCTCCACCACCTTAGATAGGTTCAAAAAGTTCGGCAAATCAGCGTTTATCCACGCCGGGCACAACTTCAACTACTACAACGAATCCAAAACGCCAAAACTCGATTCAAATTCAACCCCACAGCACCAACAGCCCCACCACATTCACGCGAAGAAGAAGCGGTCAAAAGAAAAACAGAAGTCAAAACACAAAACCAGAACCATGATTGTGGCCTCGTCCTGTGCCTCGGCACTTGTCGTTGTCTCGTTGTGCATGTGCTTGGTGTGGTGTTGCAGAAGGAGGAGGCAATTGGCGAAGAGGAGCAAGTGGGCGATCTCGAAGCCGGCCCCACTCAGCATCAAGATGATGGAGAAATCTGGACCGTTCGCGTTCGAGACCGAGTCAGGGACATCATGGGTCGCTGACCTCAAAGAACCATCTTCCGCACCCGTGGTCGTGTTCGAGAAGCCACTCATGAACCTCACCTTCGTCGACCTTCTCGCTGGCACGTCACACTTCGGCAAAGACTCCCTTCTCGCTGAGGGCAGGTGTGGGCCCGTTTATCGCGCTGTCTTACCCGGAGACATCCACGTGGCAATCAAAGTCCTCGAAAACGCCAGAGACGTCCATGATGATGACGCTGTCGCTCTCTTCGTTGACCTCTCCCAACTCAAACACCCCAATCTCTTGCCCCTCTCCGGTTACTGTATTGCAGGTAAGGAGAAGCTGGTGTTGTATGAGTTTATGTCGAACGGGGATTTGGGTAGGTGGTTGCAGGAGCTACCAACGGGGGAGACTAACGTGGAGGATTGGAGTGGTGACACGTGGGACATTATTCAAAACGGCGCCGCTTCTCGAGCCTCGCCCCCCGAAAAGATGGGGTGGTTAGTACGGCACCGAATTGCGGTGGGTGTGGCGCGTGGATTAGCGTTTCTGCACCACGCGGGGTCAAGGCCCGTCGTGCACGGACACCTCGTGACGTCCAACGTGCTTCTCGGCGACGACTTCGAGCCGCGAATTGCGGATTTCGGGTTTCGGAAGTTCGGGCGAGAAAGCGCGACGGCGAATTGTTCAACCGAGACGGACGTTTACTGTTTCGGGGTGGTGCTGATGGAGCTGCTGACGGGGAGGGCCGGCACGGCGGAGACGGTGGTTTGGGTGCGGAAGGCGGTGAGGGAGGGTCACGCGGTGAGGGCATTGGACGAGAGGCTCAAACTCGGCGGTGGAAGCGGCGACTCGGAGAGTGAGATGGTGGAGAGCCTCCGAGTCGCGTATTTGTGCACAGCCGAGTCGCCGGGGAAGAGGCCCACCATGCAGCAAGTGTTGGGCCTTCTCAAAGATATTCACCCGAGTCATGCACTCGACTGA

Predicted protein sequences of Glyma15g09050

Limit To All Plant Sequences

>Glyma15g09050.1   sequence type=predicted peptide   gene model=Glyma15g09050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPFCTFFILLSLLVILVESSCKNEDQEMVSKAFQSVSGFNSSWFETGSNCSNAEIKGINLSSKNLSGNISWKYLRNISKLKVLDLSGNFLQGQVPNWFWRSSTLLVVNLSSNRFGGSINPTSQNGSFSSLQNLNLSHNRFTNRLHLSGFSNLESLDLSHNNLGTLPSGFQNLTNLHHLDLSNCNIKGNVKPISSLTTLSFLDLSNNTLNGSFPSDFPPLNNIKFLNVSHNNLKASTTLDRFKKFGKSAFIHAGHNFNYYNESKTPKLDSNSTPQHQQPHHIHAKKKRSKEKQKSKHKTRTMIVASSCASALVVVSLCMCLVWCCRRRRQLAKRSKWAISKPAPLSIKMMEKSGPFAFETESGTSWVADLKEPSSAPVVVFEKPLMNLTFVDLLAGTSHFGKDSLLAEGRCGPVYRAVLPGDIHVAIKVLENARDVHDDDAVALFVDLSQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLQELPTGETNVEDWSGDTWDIIQNGAASRASPPEKMGWLVRHRIAVGVARGLAFLHHAGSRPVVHGHLVTSNVLLGDDFEPRIADFGFRKFGRESATANCSTETDVYCFGVVLMELLTGRAGTAETVVWVRKAVREGHAVRALDERLKLGGGSGDSESEMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPSHALD*

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