Glyma15g08941 - SoyBase

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Report for Sequence Feature Glyma15g08941

Feature Type:	gene_model
Chromosome:	Gm15
Start:	6344974
stop:	6349038
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08941

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64270	AT	Annotation by Michelle Graham. TAIR10: splicing factor, putative \| chr5:25706909-25710718 FORWARD LENGTH=1269	SoyBase	E_val: 0	ISS
GO:0006397	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA processing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
KOG0213	KOG	Splicing factor 3b, subunit 1	JGI		ISS
PTHR12097	Panther	SPLICING FACTOR 3B, SUBUNIT 1-RELATED	JGI		ISS
PF02985	PFAM	HEAT repeat	JGI		ISS
PF08920	PFAM	Splicing factor 3B subunit 1	JGI		ISS
UniRef100_B9SIK7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Splicing factor 3B subunit, putative n=1 Tax=Ricinus communis RepID=B9SIK7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_F6HQT0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6HQT0_VITVI	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g08941

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g08941 not represented in the dataset	Glyma15g08941 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08941

Paralog	Evidence	Comments
Glyma13g30196	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08941 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g083300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08941

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g08941

Limit To All Plant Sequences

>Glyma15g08941.1   sequence type=CDS   gene model=Glyma15g08941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGGTGGACCCCGAGATCGCGAAGACGCAGGAAGAGCGGAAGCGAATGGAGCAGCAACTGGCGTCGCTCACCTCCGTCACGTTTGATACCGATCTCTACGGCGGAAGCGACAAGGGCTCCTACCTCACTTCCATCCCTGCCAACGAAGACGACGAGAATCTCGACGCCATGGACAACGAGGTCGCGCGCAAGCTGGCTTCTTACACCGCCCCTAAGTCGCTTCTCAAGGACATGCCCTCCGCCCCCGACTCCGACAACGACATCGGCTTCCGCAAGCCGCAGCGCATCATCGACCGCGAGGATGACTACCGCCGCCGCCGCCTCAACCAGATCATCTCGCCGGAGCGCCACGACCCCTTTGCCGCCGGCGAGAAGACCCCCGACCCTTCGGTGAGGACCTACGCCGATATCATGCGCGAGGAGGCTCTCAAGAGGGAGAAGGAGGAGACTCTGAAAGCCATCGCTAAGAAGAAGAAGGAGGAGGAGGAGGCCGCCAAGGACGCGCCGCCTCAACAGCAGCAGAAGAGGAGGAACCGCTGGGACCAGTCTCAGGATGACGGTGGTGCCGGCGCGGCCGCGGCCGCGAAGAAGGCGAAAACATCTGATTGGGACATGCCGGACACCACTCCGGGGCGGTGGGATGCCACCCCGACGCCGGGGAGGGTTACTGACGCGACGCCTGGGAGGAGGAACCGGTGGGATGAGACTCCCACTCCTGGTAGAGTTGCGGATTCTGATGCAACACCTGCAGGTGGTGCTACACCCGGTGCCACACCTGCTGGTATGACTTGGGATGCTACTCCCAAGCTTTCTGGGATGGCTACTCCAACTCCCAAGAGGCAAAGGTCAAGGTGGGATGAGACTCCTGCTACTATGGGAAGTGCTACTCCTTTGCCAGGTGCGACTCCTGCTGCTGCTTATACTCCTGGTGTTACTCCTGTTGGTGGTATTGAACTCGCTACTCCTACCCCTGGGGCTTTACAAGGCTCCATTACGCCGGAGCAGTACAATTTGTTGAGGTGGGAGAGGGATATTGAAGAGCGGAATCGCCCCTTGACTGATGAGGAGCTTGATGCTATGTTTCCTCAAGAGGGGTATAAGGTTTTGGATCCCCTGCTCCCTGAGGATTACCAGTACTTTGGGGCGTTGTTGAATGAGGAGAATGAAGAGGAGTTGTCGCCGGATGAGCAGAAGGAAAGGAAGATTATGAAGCTTCTGCTTAAAGTGAAGAATGGGACGCCACCGCAGAGGAAGACTGCATTGAGGCAGCTTACTGATAAGGCTCGTGAGTTTGGTGCTGGGCCGTTGTTTAACCGGATTTTGCCATTGCTCATGCAGCCTACACTGGAGGATCAAGAGAGACATCTTTTGGTTAAGGTAATTGACAGGGTTTTGTATAAGTTAGATGAATTGGTACGGCCTTTTGTGCATAAGATTCTTGTTGTTATTGAACCCTTGTTGATTGATGAAGACTACTATGCCCGTGTGGAGGGCAGAGAAATAATATCTAATCTTAGTAAAGCTGCTGGGTTGGCTACTATGATTGCTGCTATGCGGCCTGATATTGATAACATTGATGAATATGTTAGGAACACTACTGCTAGGGCCTTTAGTGTTGTTGCTTCGGCTCTTGGTATTCCTGCACTGTTGCCGTTCTTGAAGGCTGTTTGTCAGAGTAAGAAATCATGGCAAGCTCGGCACACTGGGATTAAGATTGTGCAGCAGATTGCCATTTTAATTGGTTGTGCGGTGTTGCCACATCTGAGATCTCTTGTGGAAATTATAGAGCATGGACTGAATGATGAGAATCAGAAGGTGAGAACGATCACTGCATTGTCTCTTGCTGCACTTGCTGAGGCTGCTGCTCCTTATGGTATTGAAAGTTTTGACTCTGTCTTGAAGCCACTGTGGAAGGGTATTAGGCAACACCGTGGGAAGGTGTTGGCTGCATTTCTGAAGGCAATTGGGTTTATTATTCCGTTGATGGAAGCCCTGTATGCCAGTTACTATACTAAGGAAGTCATGCTCATTCTGATTCGTGAATTCCAGTCACCTGATGAAGAAATGAAGAAAATTGTTCTGAAAGTGGTGAAGCAGTGTGTGAGCACTGAGGGTGTGGAAGCTGAATATATTAGAAATGATATCCTGCCTGAGTTTTTCAGGAATTTCTGGGTTAGGAGGATGGCTCTAGATAGAAGAAACTATAAGCAACTTGTGGAGACTACTGTGGAGATAGCAAACAAAGTTGGTGTTGCAGATATTGTTGGTAGAATTGTCGAAGATCTTAAAGATGAGAGTGAACCTTATAGGCGTATGGTTATGGAGACTATTGAGAAGGTGGTTACTAACTTGGGGGCATCTGATATTGATGCACGGCTGGAAGAGCTTCTGATTGATGGTATTCTTTACGCCTTCCAAGAGCAGACCAGTGACGACGCTAATGTGATGCTTAATGGGTTTGGTGCAGTTGTAAACTCACTTGGGCAGAGAGTGAAACCATATCTTCCTCAGATTTGTGGTACTATCAAGTGGCGATTGAACAACAAGAGTGCAAAGGTGAGACAGCAAGCAGCAGATCTCATTTCAAGGATTGCTGTTGTCATGAAGCAGTGCCATGAGGAACAATTGATGGGTCATCTTGGTGTTGTCTTATATGAGTATTTGGGAGAAGAGTATCCTGAAGTCTTAGGATCAATTCTGGGAGCTCTCAAGTCAATTGTCAATGTTATCGGTATGACAAAGATGACTCCACCTATTAAGGATTTACTTCCCAGGTTGACTCCGATTTTGAAGAATAGGCACGAGAAAGTTCAGGAGAATTGTATTGACCTTGTTGGTAGGATTGCTGACCGTGGAGCTGAGTTTGTACCAGCAAGAGAGTGGATGAGGATTTGTTTTGAGTTGCTTGAGATGCTCAAAGCACACAAGAAGGGAATCCGTAGAGCTACAGTTAACACTTTTGGATATATTGCAAAAGCCATTGGACCACAAGATGTCTTGGCAACCCTATTGAATAATCTCAAGGTGCAGGAGAGGCAGAACCGTGTTTGCACAACTGTGGCCATTGCAATTGCTATGCCCATTTTAATGTCGAGCAATATGTATGTCACACTTACAACCGAATATCAGAATCAAAGCCTGGTTATGGCGTACTTCTACAAGGGCTAA

Predicted protein sequences of Glyma15g08941

Limit To All Plant Sequences

>Glyma15g08941.1   sequence type=predicted peptide   gene model=Glyma15g08941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVDPEIAKTQEERKRMEQQLASLTSVTFDTDLYGGSDKGSYLTSIPANEDDENLDAMDNEVARKLASYTAPKSLLKDMPSAPDSDNDIGFRKPQRIIDREDDYRRRRLNQIISPERHDPFAAGEKTPDPSVRTYADIMREEALKREKEETLKAIAKKKKEEEEAAKDAPPQQQQKRRNRWDQSQDDGGAGAAAAAKKAKTSDWDMPDTTPGRWDATPTPGRVTDATPGRRNRWDETPTPGRVADSDATPAGGATPGATPAGMTWDATPKLSGMATPTPKRQRSRWDETPATMGSATPLPGATPAAAYTPGVTPVGGIELATPTPGALQGSITPEQYNLLRWERDIEERNRPLTDEELDAMFPQEGYKVLDPLLPEDYQYFGALLNEENEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRQHRGKVLAAFLKAIGFIIPLMEALYASYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRNDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVTNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKSIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIAMPILMSSNMYVTLTTEYQNQSLVMAYFYKG*

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