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Report for Sequence Feature Glyma15g08941

Feature Type:gene_model
Chromosome:Gm15
Start:6344974
stop:6349038
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64270AT Annotation by Michelle Graham. TAIR10: splicing factor, putative | chr5:25706909-25710718 FORWARD LENGTH=1269 SoyBaseE_val: 0ISS
GO:0006397GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA processing SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
KOG0213 KOG Splicing factor 3b, subunit 1 JGI ISS
PTHR12097Panther SPLICING FACTOR 3B, SUBUNIT 1-RELATED JGI ISS
PF02985PFAM HEAT repeat JGI ISS
PF08920PFAM Splicing factor 3B subunit 1 JGI ISS
UniRef100_B9SIK7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Splicing factor 3B subunit, putative n=1 Tax=Ricinus communis RepID=B9SIK7_RICCO SoyBaseE_val: 0ISS
UniRef100_F6HQT0UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6HQT0_VITVI SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g08941 not represented in the dataset

Glyma15g08941 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g30196 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g083300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g08941.1   sequence type=CDS   gene model=Glyma15g08941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCGGTGGACCCCGAGATCGCGAAGACGCAGGAAGAGCGGAAGCGAATGGAGCAGCAACTGGCGTCGCTCACCTCCGTCACGTTTGATACCGATCTCTACGGCGGAAGCGACAAGGGCTCCTACCTCACTTCCATCCCTGCCAACGAAGACGACGAGAATCTCGACGCCATGGACAACGAGGTCGCGCGCAAGCTGGCTTCTTACACCGCCCCTAAGTCGCTTCTCAAGGACATGCCCTCCGCCCCCGACTCCGACAACGACATCGGCTTCCGCAAGCCGCAGCGCATCATCGACCGCGAGGATGACTACCGCCGCCGCCGCCTCAACCAGATCATCTCGCCGGAGCGCCACGACCCCTTTGCCGCCGGCGAGAAGACCCCCGACCCTTCGGTGAGGACCTACGCCGATATCATGCGCGAGGAGGCTCTCAAGAGGGAGAAGGAGGAGACTCTGAAAGCCATCGCTAAGAAGAAGAAGGAGGAGGAGGAGGCCGCCAAGGACGCGCCGCCTCAACAGCAGCAGAAGAGGAGGAACCGCTGGGACCAGTCTCAGGATGACGGTGGTGCCGGCGCGGCCGCGGCCGCGAAGAAGGCGAAAACATCTGATTGGGACATGCCGGACACCACTCCGGGGCGGTGGGATGCCACCCCGACGCCGGGGAGGGTTACTGACGCGACGCCTGGGAGGAGGAACCGGTGGGATGAGACTCCCACTCCTGGTAGAGTTGCGGATTCTGATGCAACACCTGCAGGTGGTGCTACACCCGGTGCCACACCTGCTGGTATGACTTGGGATGCTACTCCCAAGCTTTCTGGGATGGCTACTCCAACTCCCAAGAGGCAAAGGTCAAGGTGGGATGAGACTCCTGCTACTATGGGAAGTGCTACTCCTTTGCCAGGTGCGACTCCTGCTGCTGCTTATACTCCTGGTGTTACTCCTGTTGGTGGTATTGAACTCGCTACTCCTACCCCTGGGGCTTTACAAGGCTCCATTACGCCGGAGCAGTACAATTTGTTGAGGTGGGAGAGGGATATTGAAGAGCGGAATCGCCCCTTGACTGATGAGGAGCTTGATGCTATGTTTCCTCAAGAGGGGTATAAGGTTTTGGATCCCCTGCTCCCTGAGGATTACCAGTACTTTGGGGCGTTGTTGAATGAGGAGAATGAAGAGGAGTTGTCGCCGGATGAGCAGAAGGAAAGGAAGATTATGAAGCTTCTGCTTAAAGTGAAGAATGGGACGCCACCGCAGAGGAAGACTGCATTGAGGCAGCTTACTGATAAGGCTCGTGAGTTTGGTGCTGGGCCGTTGTTTAACCGGATTTTGCCATTGCTCATGCAGCCTACACTGGAGGATCAAGAGAGACATCTTTTGGTTAAGGTAATTGACAGGGTTTTGTATAAGTTAGATGAATTGGTACGGCCTTTTGTGCATAAGATTCTTGTTGTTATTGAACCCTTGTTGATTGATGAAGACTACTATGCCCGTGTGGAGGGCAGAGAAATAATATCTAATCTTAGTAAAGCTGCTGGGTTGGCTACTATGATTGCTGCTATGCGGCCTGATATTGATAACATTGATGAATATGTTAGGAACACTACTGCTAGGGCCTTTAGTGTTGTTGCTTCGGCTCTTGGTATTCCTGCACTGTTGCCGTTCTTGAAGGCTGTTTGTCAGAGTAAGAAATCATGGCAAGCTCGGCACACTGGGATTAAGATTGTGCAGCAGATTGCCATTTTAATTGGTTGTGCGGTGTTGCCACATCTGAGATCTCTTGTGGAAATTATAGAGCATGGACTGAATGATGAGAATCAGAAGGTGAGAACGATCACTGCATTGTCTCTTGCTGCACTTGCTGAGGCTGCTGCTCCTTATGGTATTGAAAGTTTTGACTCTGTCTTGAAGCCACTGTGGAAGGGTATTAGGCAACACCGTGGGAAGGTGTTGGCTGCATTTCTGAAGGCAATTGGGTTTATTATTCCGTTGATGGAAGCCCTGTATGCCAGTTACTATACTAAGGAAGTCATGCTCATTCTGATTCGTGAATTCCAGTCACCTGATGAAGAAATGAAGAAAATTGTTCTGAAAGTGGTGAAGCAGTGTGTGAGCACTGAGGGTGTGGAAGCTGAATATATTAGAAATGATATCCTGCCTGAGTTTTTCAGGAATTTCTGGGTTAGGAGGATGGCTCTAGATAGAAGAAACTATAAGCAACTTGTGGAGACTACTGTGGAGATAGCAAACAAAGTTGGTGTTGCAGATATTGTTGGTAGAATTGTCGAAGATCTTAAAGATGAGAGTGAACCTTATAGGCGTATGGTTATGGAGACTATTGAGAAGGTGGTTACTAACTTGGGGGCATCTGATATTGATGCACGGCTGGAAGAGCTTCTGATTGATGGTATTCTTTACGCCTTCCAAGAGCAGACCAGTGACGACGCTAATGTGATGCTTAATGGGTTTGGTGCAGTTGTAAACTCACTTGGGCAGAGAGTGAAACCATATCTTCCTCAGATTTGTGGTACTATCAAGTGGCGATTGAACAACAAGAGTGCAAAGGTGAGACAGCAAGCAGCAGATCTCATTTCAAGGATTGCTGTTGTCATGAAGCAGTGCCATGAGGAACAATTGATGGGTCATCTTGGTGTTGTCTTATATGAGTATTTGGGAGAAGAGTATCCTGAAGTCTTAGGATCAATTCTGGGAGCTCTCAAGTCAATTGTCAATGTTATCGGTATGACAAAGATGACTCCACCTATTAAGGATTTACTTCCCAGGTTGACTCCGATTTTGAAGAATAGGCACGAGAAAGTTCAGGAGAATTGTATTGACCTTGTTGGTAGGATTGCTGACCGTGGAGCTGAGTTTGTACCAGCAAGAGAGTGGATGAGGATTTGTTTTGAGTTGCTTGAGATGCTCAAAGCACACAAGAAGGGAATCCGTAGAGCTACAGTTAACACTTTTGGATATATTGCAAAAGCCATTGGACCACAAGATGTCTTGGCAACCCTATTGAATAATCTCAAGGTGCAGGAGAGGCAGAACCGTGTTTGCACAACTGTGGCCATTGCAATTGCTATGCCCATTTTAATGTCGAGCAATATGTATGTCACACTTACAACCGAATATCAGAATCAAAGCCTGGTTATGGCGTACTTCTACAAGGGCTAA

>Glyma15g08941.1   sequence type=predicted peptide   gene model=Glyma15g08941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVDPEIAKTQEERKRMEQQLASLTSVTFDTDLYGGSDKGSYLTSIPANEDDENLDAMDNEVARKLASYTAPKSLLKDMPSAPDSDNDIGFRKPQRIIDREDDYRRRRLNQIISPERHDPFAAGEKTPDPSVRTYADIMREEALKREKEETLKAIAKKKKEEEEAAKDAPPQQQQKRRNRWDQSQDDGGAGAAAAAKKAKTSDWDMPDTTPGRWDATPTPGRVTDATPGRRNRWDETPTPGRVADSDATPAGGATPGATPAGMTWDATPKLSGMATPTPKRQRSRWDETPATMGSATPLPGATPAAAYTPGVTPVGGIELATPTPGALQGSITPEQYNLLRWERDIEERNRPLTDEELDAMFPQEGYKVLDPLLPEDYQYFGALLNEENEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRQHRGKVLAAFLKAIGFIIPLMEALYASYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRNDILPEFFRNFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVTNLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKSIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIAMPILMSSNMYVTLTTEYQNQSLVMAYFYKG*







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