SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g08890

Feature Type:gene_model
Chromosome:Gm15
Start:6314308
stop:6316444
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g08890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58630AT Annotation by Michelle Graham. TAIR10: sequence-specific DNA binding transcription factors | chr3:21683928-21685771 REVERSE LENGTH=321 SoyBaseE_val: 3.00E-41ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF10545PFAM Alcohol dehydrogenase transcription factor Myb/SANT-like JGI ISS
UniRef100_B9S9B5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S9B5_RICCO SoyBaseE_val: 5.00E-77ISS
UniRef100_UPI000233BA41UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BA41 related cluster n=1 Tax=unknown RepID=UPI000233BA41 SoyBaseE_val: 6.00E-163ISS

Expression Patterns of Glyma15g08890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08890
ParalogEvidenceComments
Glyma13g30280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g082900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g08890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g08890
>Glyma15g08890.2   sequence type=CDS   gene model=Glyma15g08890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGACTTCCACGACTCCCTCTCCACCACGCCGCCGCCGCAGCCGTCCCGCCCCGTCCCCGTCCGCGAGGACTGCTGGTCCGAGGAGGCCTCCGCCACGCTCGTCGACGCCTGGGGCCGCCGCTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGCAGGACGTCGCCGACGCCGTCAACGCGCTCCACGGCCACACTAAAAAGACGCACCGTACCGACGTCCAGTGCAAGAACCGCATCGACACCATTAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCGGCCTCCAACGGTACTCTCTCTTCCTCTTGGCCTTTCTACGAGCGCTTGGACGCTCTTATCGGCCCTAATTTTAGCGCGAAGAAATCCACCTCCCCGCCGTCTCCGTCGCCGCCGGTGGCTCTTCCTTTGCTGCCGCATCGGAAGAACCAAAACCAGAACCCTTCCTCTTCTCCTGCGATTTCGGTGCCGCCAACGGCCGTCGCGCTGCCGCAGAAGCGCTCTGCGGCAGCGGCGATGGACGAGGGTTACTTCAGGAGGAATTACTCCGCCGTGGCTGCCGCAGCGGCGGCGGCGGAGGCTGATGAGGAGGAAGATGAGGATGAGGCGGAGGATTTGGAGGAGGAGGAAGAATGTGAAGAGGAAGGGAGGGGGAGCGAAGGGCCATTTTTTTAA
Predicted protein sequences of Glyma15g08890
>Glyma15g08890.2   sequence type=predicted peptide   gene model=Glyma15g08890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPDFHDSLSTTPPPQPSRPVPVREDCWSEEASATLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSASNGTLSSSWPFYERLDALIGPNFSAKKSTSPPSPSPPVALPLLPHRKNQNQNPSSSPAISVPPTAVALPQKRSAAAAMDEGYFRRNYSAVAAAAAAAEADEEEDEDEAEDLEEEEECEEEGRGSEGPFF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo