Glyma15g08880 - SoyBase

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Report for Sequence Feature Glyma15g08880

Feature Type:	gene_model
Chromosome:	Gm15
Start:	6299834
stop:	6309962
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42610	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF640) \| chr2:17748005-17748538 FORWARD LENGTH=177	SoyBase	E_val: 5.00E-81	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04852	PFAM	Protein of unknown function (DUF640)	JGI		ISS
UniRef100_C6SXW0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXW0_SOYBN	SoyBase	E_val: 5.00E-133	ISS
UniRef100_G7IU28	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 177 protein n=1 Tax=Medicago truncatula RepID=G7IU28_MEDTR	SoyBase	E_val: 4.00E-80	ISS

Expression Patterns of Glyma15g08880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g08880 not represented in the dataset	Glyma15g08880 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08880

Paralog	Evidence	Comments
Glyma13g30290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g082800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g08880

Limit To All Plant Sequences

>Glyma15g08880.4   sequence type=transcript   gene model=Glyma15g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATGCTAAAAACAATTTATAATTACCAAAATTTCATTAGCTCACAAAGCACCGATGATTATCGATAACCAAGTTAATTAGTGCACTAAATCCAATCAGACATACTTGGACTATAAGCACCAAAGCACCAACTACAAGGTAACCGGCTAATCCATTCGGCTTCCTTGAATTAGACAAAAACAATAAAATAATTTGATAAGGTCTTAATTATTTATGCCATTTACCAAATCATAATGCCTAGCTACTATGATCGAAATGATGATCGATGACGGCATATAACATTACTTACATATTTTAATATTTTTTAATCTAAAAGAAACAAAACCAAAATCATATATATATATATATATATATATATATATATATATATAAGTTAGTGCAAATAGGTAAAAAGTGGAAATACAAATATGAGAGAGAGAAGGGAGTAGGAAAAGGGGAACAAAAGCAGCTTCAGATAGGGCCCAGAACATGTCCTCTCAAAAGACCCCAAGATGTGATTTTCATCTTTGTCCACTGCACTAACACATTCTTTTCTTTCACCTCCTCTTGTGTCTTATTTCTACCTATCCCAATTTCCAGCCACCATGTCCGGCGAAATGCATACCGATTCCGCCTCCTCGTCACGAGCCGCCGCAACCTCCGATCAGCGTCATCAGCAGCCGGCGGCGGCCCCTCTGAGCCGATACGAATCCCAGAAACGGCGAGACTGGAACACCTTCGGCCAGTACTTGAAGAACCAGACACCCCCAGTTTCGCTGTCACAGTGCAACTTCAACCACGTGCTTGAGTTCCTTCGCTACCTTGACCAATTTGGGAAGACCAAGGTCCACTTGCACGGTTGCATCTTTTTTGGGCAGCCTGACCCGCCCGCACCCTGCACCTGTCCTCTCAGACAGGCTTGGGGGAGTCTTGATGCTCTCATCGGACGGCTTAGGGCTGCCTATGAAGAGCACGGAGGCTCCGCCGAAACTAATCCCTTTGGAAGTGGAGCTATTCGCGTGTACCTTCGCGAAGTCAAGGAGTGTCAAGCAAAGGCCAGAGGGATCCCATACACCAAGAAAAAGAAGAAGAAGAACCAACTTAAGGGCCCTCATGATGCTCCAAAGTCCTTCAAGCAATTGGCCACTTGAGATCGATCGATGGATGGACTGCAAGAACGACTTACTTGGATTGGGGATTTAATTTGCCAAAGTGAACGAGAGCATGTCGTAAAAGTATCATCTCTACTGCTGCTTCGACTAAAAATGATCAAAGAAAGATATTAATATCCCACTTAATTAGTACGTAGTTCTGAACATCAGAATAATCCTTTTGGAGCAAGTTTGTAGGTCTTAAATATATGATCGAAGTTCAACCTTGTAAGTTCTTTTCACATATTAGACCTCATCCCCAAAATAGAAACGCAAAGAGTTTAGATTCTCTGCAGTGGTGCAGCACCGGCAGCAACATCAACATGAGATCGAAAATGCAAACTCGCACCAAGGTGTTTTTGGCGTGTTTGCAATTTAAAAAGAGTTCAAACATGGCA

>Glyma15g08880.5   sequence type=transcript   gene model=Glyma15g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATGCTAAAAACAATTTATAATTACCAAAATTTCATTAGCTCACAAAGCACCGATGATTATCGATAACCAAGTTAATTAGTGCACTAAATCCAATCAGACATACTTGGACTATAAGCACCAAAGCACCAACTACAAGGTAACCGGCTAATCCATTCGGCTTCCTTGAATTAGACAAAAACAATAAAATAATTTGATAAGGTCTTAATTATTTATGCCATTTACCAAATCATAATGCCTAGCTACTATGATCGAAATGATGATCGATGACGGCATATAACATTACTTACATATTTTAATATTTTTTAATCTAAAAGAAACAAAACCAAAATCATATATATATATATATATATATATATATATATATATATAAGTTAGTGCAAATAGGTAAAAAGTGGAAATACAAATATGAGAGAGAGAAGGGAGTAGGAAAAGGGGAACAAAAGCAGCTTCAGATAGGGCCCAGAACATGTCCTCTCAAAAGACCCCAAGATGTGATTTTCATCTTTGTCCACTGCACTAACACATTCTTTTCTTTCACCTCCTCTTGTGTCTTATTTCTACCTATCCCAATTTCCAGCCACCATGTCCGGCGAAATGCATACCGATTCCGCCTCCTCGTCACGAGCCGCCGCAACCTCCGATCAGCGTCATCAGCAGCCGGCGGCGGCCCCTCTGAGCCGATACGAATCCCAGAAACGGCGAGACTGGAACACCTTCGGCCAGTACTTGAAGAACCAGACACCCCCAGTTTCGCTGTCACAGTGCAACTTCAACCACGTGCTTGAGTTCCTTCGCTACCTTGACCAATTTGGGAAGACCAAGGTCCACTTGCACGGTTGCATCTTTTTTGGGCAGCCTGACCCGCCCGCACCCTGCACCTGTCCTCTCAGACAGGCTTGGGGGAGTCTTGATGCTCTCATCGGACGGCTTAGGGCTGCCTATGAAGAGCACGGAGGCTCCGCCGAAACTAATCCCTTTGGAAGTGGAGCTATTCGCGTGTACCTTCGCGAAGTCAAGGAGTGTCAAGCAAAGGCCAGAGGGATCCCATACACCAAGAAAAAGAAGAAGAAGAACCAACTTAAGGGCCCTCATGATGCTCCAAAGTCCTTCAAGCAATTGGCCACTTGAGATCGATCGATGGATGGACTGCAAGAACGACTTACTTGGATTGGGGATTTAATTTGCCAAAGTGAACGAGAGCATGTCGTAAAAGTATCATCTCTACTGCTGCTTCGACTAAAAATGATCAAAGAAAGATATTAATATCCCACTTAATTAGTACGTAGTTCTGAACATCAGAATAATCCTTTTGGAGCAAGTTTGTAGGTCTTAAATATATGATCGAAGTTCAACCTTGTAAGTTCTTTTCACATATTAGACCTCATCCCCAAAATAGAAACGGTAAGATCGAATGGTTAGATTTACAGATGTTTACTACTTTTATTACCACTGTTATATATTACTCTCTCAAGTCTCACACATGCACACACAAATGGCAATCACGCATGATCCAAATTTCCAATAATT

Coding sequences of Glyma15g08880

Limit To All Plant Sequences

>Glyma15g08880.3   sequence type=CDS   gene model=Glyma15g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGGCGAAATGCATACCGATTCCGCCTCCTCGTCACGAGCCGCCGCAACCTCCGATCAGCGTCATCAGCAGCCGGCGGCGGCCCCTCTGAGCCGATACGAATCCCAGAAACGGCGAGACTGGAACACCTTCGGCCAGTACTTGAAGAACCAGACACCCCCAGTTTCGCTGTCACAGTGCAACTTCAACCACGTGCTTGAGTTCCTTCGCTACCTTGACCAATTTGGGAAGACCAAGGTCCACTTGCACGGTTGCATCTTTTTTGGGCAGCCTGACCCGCCCGCACCCTGCACCTGTCCTCTCAGACAGGCTTGGGGGAGTCTTGATGCTCTCATCGGACGGCTTAGGGCTGCCTATGAAGAGCACGGAGGCTCCGCCGAAACTAATCCCTTTGGAAGTGGAGCTATTCGCGTGTACCTTCGCGAAGTCAAGGAGTGTCAAGCAAAGGCCAGAGGGATCCCATACACCAAGAAAAAGAAGAAGAAGAACCAACTTAAGGGCCCTCATGATGCTCCAAAGTCCTTCAAGCAATTGGCCACTTGA

>Glyma15g08880.4   sequence type=CDS   gene model=Glyma15g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGGCGAAATGCATACCGATTCCGCCTCCTCGTCACGAGCCGCCGCAACCTCCGATCAGCGTCATCAGCAGCCGGCGGCGGCCCCTCTGAGCCGATACGAATCCCAGAAACGGCGAGACTGGAACACCTTCGGCCAGTACTTGAAGAACCAGACACCCCCAGTTTCGCTGTCACAGTGCAACTTCAACCACGTGCTTGAGTTCCTTCGCTACCTTGACCAATTTGGGAAGACCAAGGTCCACTTGCACGGTTGCATCTTTTTTGGGCAGCCTGACCCGCCCGCACCCTGCACCTGTCCTCTCAGACAGGCTTGGGGGAGTCTTGATGCTCTCATCGGACGGCTTAGGGCTGCCTATGAAGAGCACGGAGGCTCCGCCGAAACTAATCCCTTTGGAAGTGGAGCTATTCGCGTGTACCTTCGCGAAGTCAAGGAGTGTCAAGCAAAGGCCAGAGGGATCCCATACACCAAGAAAAAGAAGAAGAAGAACCAACTTAAGGGCCCTCATGATGCTCCAAAGTCCTTCAAGCAATTGGCCACTTGA

>Glyma15g08880.5   sequence type=CDS   gene model=Glyma15g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGGCGAAATGCATACCGATTCCGCCTCCTCGTCACGAGCCGCCGCAACCTCCGATCAGCGTCATCAGCAGCCGGCGGCGGCCCCTCTGAGCCGATACGAATCCCAGAAACGGCGAGACTGGAACACCTTCGGCCAGTACTTGAAGAACCAGACACCCCCAGTTTCGCTGTCACAGTGCAACTTCAACCACGTGCTTGAGTTCCTTCGCTACCTTGACCAATTTGGGAAGACCAAGGTCCACTTGCACGGTTGCATCTTTTTTGGGCAGCCTGACCCGCCCGCACCCTGCACCTGTCCTCTCAGACAGGCTTGGGGGAGTCTTGATGCTCTCATCGGACGGCTTAGGGCTGCCTATGAAGAGCACGGAGGCTCCGCCGAAACTAATCCCTTTGGAAGTGGAGCTATTCGCGTGTACCTTCGCGAAGTCAAGGAGTGTCAAGCAAAGGCCAGAGGGATCCCATACACCAAGAAAAAGAAGAAGAAGAACCAACTTAAGGGCCCTCATGATGCTCCAAAGTCCTTCAAGCAATTGGCCACTTGA

Predicted protein sequences of Glyma15g08880

Limit To All Plant Sequences

>Glyma15g08880.3   sequence type=predicted peptide   gene model=Glyma15g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEMHTDSASSSRAAATSDQRHQQPAAAPLSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNFNHVLEFLRYLDQFGKTKVHLHGCIFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSAETNPFGSGAIRVYLREVKECQAKARGIPYTKKKKKKNQLKGPHDAPKSFKQLAT*

>Glyma15g08880.4   sequence type=predicted peptide   gene model=Glyma15g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEMHTDSASSSRAAATSDQRHQQPAAAPLSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNFNHVLEFLRYLDQFGKTKVHLHGCIFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSAETNPFGSGAIRVYLREVKECQAKARGIPYTKKKKKKNQLKGPHDAPKSFKQLAT*

>Glyma15g08880.5   sequence type=predicted peptide   gene model=Glyma15g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGEMHTDSASSSRAAATSDQRHQQPAAAPLSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNFNHVLEFLRYLDQFGKTKVHLHGCIFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSAETNPFGSGAIRVYLREVKECQAKARGIPYTKKKKKKNQLKGPHDAPKSFKQLAT*

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