Glyma15g08870 - SoyBase

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Report for Sequence Feature Glyma15g08870

Feature Type:	gene_model
Chromosome:	Gm15
Start:	6281350
stop:	6283281
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15890	AT	Annotation by Michelle Graham. TAIR10: TRICHOME BIREFRINGENCE-LIKE 21 \| chr5:5187687-5189348 REVERSE LENGTH=526	SoyBase	E_val: 3.00E-114	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
PTHR13533	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13533:SF3	Panther	gb def: unknown protein [takifugu rubripes]	JGI		ISS
PF03005	PFAM	Arabidopsis proteins of unknown function	JGI		ISS
UniRef100_I1MES0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MES0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LFT1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein trichome birefringence-like 21 n=1 Tax=Arabidopsis thaliana RepID=Q9LFT1_ARATH	SoyBase	E_val: 1.00E-111	ISS

Expression Patterns of Glyma15g08870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08870

Paralog	Evidence	Comments
Glyma13g30300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g082700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g08870

Limit To All Plant Sequences

>Glyma15g08870.1   sequence type=CDS   gene model=Glyma15g08870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGAAGCATTCCCAAAGGTGCGTTCTTATTACCCCTCACTCTGTTTCTCATCGTGCTACTCCTTCCTCTGTTCAGAAACTTCATTCAATCATCTCCAAAGACATATGCCAGCAACTTGGAAACCAAAGAAACAAGGAGATGCAACATATTTTCAGGAAACTGGGTTCCTTACCCCAAAGAACCTTACTACAACAATGAAACCTGCCCTTTCATATTAGACCAGATTAATTGCATCAAGAATGGTAGACCCGACAGAGATTTCCTCAAATTAAGGTGGAAACCTCATCATTGTGAGCTTCCTCTGTTTGATGCGACTCAGTTCCTGGAGCTAGTACGAGGAAAGTCAATGGCCTTTGTTGGAGACTCAATGGGGAGAAATCAACTAGAGTCCTTACTGTGCCTCATAAATACTGTTGCACATCCCGAGGACATTACAGAGAAATATACATCAAACGATAACATATTTTTCAGATGGTGGTTCGTGCCTGATTACAATTTTACAGTTACAACAATGTGGTCACCATTTTTAGTGAAGTTCAACGACTCAGATCCCACTGGTCGTGGTTTCTACAGCGCCACGAAGCTTTATCTAGAAGAGGCAGATGAAGCATGGAGAAGCAAAATTAAAGATTTTGACTTTGTGGTGTTCTCAACGGGACAGTGGTTCTTCCGACCATTAACGTTCTATGAGAAGGGGCAAGTTGTCGGGTGTCAAAAATGCGAGAACAGTACAGAGCTTAACTACTATGGGTACAAGAAGGCGTTTCAAACAGCTTTTAGGACTATCAGAAAGCTTGAAGGGTTCAAGGGGTTGGCTTTTTTGGTGACTCACTCTCCGGAGCACTTTGAGAACGGGGCGTGGAATGAAGGTGGGACTTGTAACAGAACAAAGCCATTTGAAGAAAAGGGGGTTTATGAAAATGGGGATATTGTGGAAGCGTTGCATCAGATACAAGTGGAGGAGTTTAATGCAGCGAGAGAAAAGGGTTTGCGGTTTGGTTTGATAGATATAACTGATGCAATGGGGATGAGGGCTGATGCACACCCCGGTAGGTTTAGGCTTGGGGGGAATAATAATAACAATTTGAATGTGAATGACTGTGTTCACTGGTGCTCCCCAGGTGCTGTTGACACTTGGAATGAGTTTTTGCTGTATTTGATGAAATTGGAAGCTGAAATACAGCATAAACATAAAGGTAACATGTTATGA

Predicted protein sequences of Glyma15g08870

Limit To All Plant Sequences

>Glyma15g08870.1   sequence type=predicted peptide   gene model=Glyma15g08870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGSIPKGAFLLPLTLFLIVLLLPLFRNFIQSSPKTYASNLETKETRRCNIFSGNWVPYPKEPYYNNETCPFILDQINCIKNGRPDRDFLKLRWKPHHCELPLFDATQFLELVRGKSMAFVGDSMGRNQLESLLCLINTVAHPEDITEKYTSNDNIFFRWWFVPDYNFTVTTMWSPFLVKFNDSDPTGRGFYSATKLYLEEADEAWRSKIKDFDFVVFSTGQWFFRPLTFYEKGQVVGCQKCENSTELNYYGYKKAFQTAFRTIRKLEGFKGLAFLVTHSPEHFENGAWNEGGTCNRTKPFEEKGVYENGDIVEALHQIQVEEFNAAREKGLRFGLIDITDAMGMRADAHPGRFRLGGNNNNNLNVNDCVHWCSPGAVDTWNEFLLYLMKLEAEIQHKHKGNML*

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