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Report for Sequence Feature Glyma15g08760

Feature Type:gene_model
Chromosome:Gm15
Start:6186461
stop:6186658
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G28590AT Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10047509-10049300 REVERSE LENGTH=403 SoyBaseE_val: 3.00E-18ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
PTHR22835Panther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN JGI ISS
PTHR22835:SF39Panther LATERAL SIGNALING TARGET PROTEIN 2 JGI ISS
UniRef100_G7IKA6UniRef Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7IKA6_MEDTR SoyBaseE_val: 5.00E-20ISS
UniRef100_I1M1V5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M1V5_SOYBN SoyBaseE_val: 6.00E-36ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g08760 not represented in the dataset

Glyma15g08760 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g081200 Wm82.a2.v1IGC As supplied by JGI
Glyma15g08745 Wm82.a1.v1.1IGC Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g08760.1   sequence type=CDS   gene model=Glyma15g08760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGGGGACGCAGGAGTGGTTGCTTGTGATGATGCTTCACAATATGTTAGTTGGGATGGCTATCATTTGACTGAGGCTGCTTATAGATTGATGACCAAAGGTTTATTAGATGGACCATACACCATTCCTAAATTTAATGTCTCGTGTTTCATAGGTGAAACCATCCGAAATTTTAATGACTATGCAATGAAATAG

>Glyma15g08760.1   sequence type=predicted peptide   gene model=Glyma15g08760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCGDAGVVACDDASQYVSWDGYHLTEAAYRLMTKGLLDGPYTIPKFNVSCFIGETIRNFNDYAMK*







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