SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G28960 | AT | Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 15 | chr1:10110020-10111607 REVERSE LENGTH=285 | SoyBase | E_val: 1.00E-87 | ISS |
| GO:0006104 | GO-bp | Annotation by Michelle Graham. GO Biological Process: succinyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0006753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleoside phosphate metabolic process | SoyBase | N/A | ISS |
| GO:0006914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagy | SoyBase | N/A | ISS |
| GO:0015937 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coenzyme A biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0008893 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity | SoyBase | N/A | ISS |
| GO:0010945 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: CoA pyrophosphatase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG3069 | KOG | Peroxisomal NUDIX hydrolase | JGI | ISS | |
| PTHR12992 | Panther | MUTT-NUDIX-RELATED | JGI | ISS | |
| PF00293 | PFAM | NUDIX domain | JGI | ISS | |
| UniRef100_G7IK84 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=1 Tax=Medicago truncatula RepID=G7IK84_MEDTR | SoyBase | E_val: 4.00E-128 | ISS |
| UniRef100_I1MEP8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MEP8_SOYBN | SoyBase | E_val: 1.00E-165 | ISS |
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Glyma15g08673 not represented in the dataset |
Glyma15g08673 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g08673.2 sequence type=transcript gene model=Glyma15g08673 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAATGGAATATTTATTAGAAATAAAAAAAAACATATTTAAGTGAATAACTAATAAAAAAGTAAAGTTGTAAGGAGTGGGTACTTGGTAACAACAATCAACGTGAGGTTGCGTGACAGGGGAATGGGTTCGAACAGGGCGGAGGTACGAGGTTCACAGAGATTACAGGCTCTGATTCACCATCTCCACTCTTCTATTCCCTCTGACTCTAACGAACCCAATTCAAAATTCACCGTTTGGAAGAAGAGAGCAGCAGTTCTGATCTGCGTCTTCGAAGGCGCCGATGGGAATCTTCGAGTATTTCTCACCCAGCGGGCTTCCTCTCTCTCAACCCACTCCGGTGAGGTTGCTTTGCCAGGTGGCAAGAGGGAAGAAGGTGATGCTGACGATGTACAAACAGCGCTGAGAGAGGCTAAGGAGGAAATTGGCTTGGACCCTTCTCTTGTTTCTGTTATCACTCTTCTCCCTCCCTTTCATACTAAGTATGGTGTTACAATAATACCTGTGGTTGGAGTACTGTTCGACAAGGATGCATTTTCACCTGTTTTAAATTCAGCTGAAGTTGAAGCAATATTTGATGTTCCATTGGAGATGTTCCTCAAGGTTTATGCTACTGTTCCTGTTCTCGCTTATTTATTTTTTTTACATAAAGGCAAATGAACTTAATTTCT
>Glyma15g08673.1 sequence type=CDS gene model=Glyma15g08673 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCGAACAGGGCGGAGGTACGAGGTTCACAGAGATTACAGGCTCTGATTCACCATCTCCACTCTTCTATTCCCTCTGACTCTAACGAACCCAATTCAAAATTCACCGTTTGGAAGAAGAGAGCAGCAGTTCTGATCTGCGTCTTCGAAGGCGCCGATGGGAATCTTCGAGTATTTCTCACCCAGCGGGCTTCCTCTCTCTCAACCCACTCCGGTGAGGTTGCTTTGCCAGGTGGCAAGAGGGAAGAAGGTGATGCTGACGATGTACAAACAGCGCTGAGAGAGGCTAAGGAGGAAATTGGCTTGGACCCTTCTCTTGTTTCTGTTATCACTCTTCTCCCTCCCTTTCATACTAAGTATGGTGTTACAATAATACCTGTGGTTGGAGTACTGTTCGACAAGGATGCATTTTCACCTGTTTTAAATTCAGCTGAAGTTGAAGCAATATTTGATGTTCCATTGGAGATGTTCCTCAAGAACGATAACAGAAGAGCCGAGGAAAGAGAGTGGATGGGGGAGAAGCATCTTGTACATTATTTTGATTATGAAGATGGGAATAAGAAGTATGTGATATGGGCTATAACTGCTGCAATCTTAATTCGGTCGGCTACTCTTTTACTTCAGCGGCCACCTGCATTTCTAGAGCAGAGGCCCAAAATATGGGGAGGAATGACTGAAAATGACATATGA >Glyma15g08673.2 sequence type=CDS gene model=Glyma15g08673 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCGAACAGGGCGGAGGTACGAGGTTCACAGAGATTACAGGCTCTGATTCACCATCTCCACTCTTCTATTCCCTCTGACTCTAACGAACCCAATTCAAAATTCACCGTTTGGAAGAAGAGAGCAGCAGTTCTGATCTGCGTCTTCGAAGGCGCCGATGGGAATCTTCGAGTATTTCTCACCCAGCGGGCTTCCTCTCTCTCAACCCACTCCGGTGAGGTTGCTTTGCCAGGTGGCAAGAGGGAAGAAGGTGATGCTGACGATGTACAAACAGCGCTGAGAGAGGCTAAGGAGGAAATTGGCTTGGACCCTTCTCTTGTTTCTGTTATCACTCTTCTCCCTCCCTTTCATACTAAGTATGGTGTTACAATAATACCTGTGGTTGGAGTACTGTTCGACAAGGATGCATTTTCACCTGTTTTAAATTCAGCTGAAGTTGAAGCAATATTTGATGTTCCATTGGAGATGTTCCTCAAGGTTTATGCTACTGTTCCTGTTCTCGCTTATTTATTTTTTTTACATAAAGGCAAATGA
>Glyma15g08673.1 sequence type=predicted peptide gene model=Glyma15g08673 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSNRAEVRGSQRLQALIHHLHSSIPSDSNEPNSKFTVWKKRAAVLICVFEGADGNLRVFLTQRASSLSTHSGEVALPGGKREEGDADDVQTALREAKEEIGLDPSLVSVITLLPPFHTKYGVTIIPVVGVLFDKDAFSPVLNSAEVEAIFDVPLEMFLKNDNRRAEEREWMGEKHLVHYFDYEDGNKKYVIWAITAAILIRSATLLLQRPPAFLEQRPKIWGGMTENDI* >Glyma15g08673.2 sequence type=predicted peptide gene model=Glyma15g08673 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSNRAEVRGSQRLQALIHHLHSSIPSDSNEPNSKFTVWKKRAAVLICVFEGADGNLRVFLTQRASSLSTHSGEVALPGGKREEGDADDVQTALREAKEEIGLDPSLVSVITLLPPFHTKYGVTIIPVVGVLFDKDAFSPVLNSAEVEAIFDVPLEMFLKVYATVPVLAYLFFLHKGK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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