Glyma15g08610 - SoyBase

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Report for Sequence Feature Glyma15g08610

Feature Type:	gene_model
Chromosome:	Gm15
Start:	6096921
stop:	6100047
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18460	AT	Annotation by Michelle Graham. TAIR10: D-Tyr-tRNA(Tyr) deacylase family protein \| chr4:10195763-10196679 REVERSE LENGTH=153	SoyBase	E_val: 1.00E-90	ISS
GO:0019478	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-amino acid catabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
KOG3323	KOG	D-Tyr-tRNA (Tyr) deacylase	JGI		ISS
PTHR10472	Panther	D-TYROSYL-TRNA(TYR) DEACYLASE	JGI		ISS
PTHR10472:SF3	Panther	HISTIDYL-TRNA SYNTHETASE-RELATED	JGI		ISS
PF02580	PFAM	D-Tyr-tRNA(Tyr) deacylase	JGI		ISS
UniRef100_I1MEP2	UniRef	Annotation by Michelle Graham. Best UniRef hit: D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Glycine max RepID=I1MEP2_SOYBN	SoyBase	E_val: 3.00E-114	ISS
UniRef100_I1MEP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Glycine max RepID=I1MEP2_SOYBN	SoyBase	E_val: 3.00E-114	ISS

Expression Patterns of Glyma15g08610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g08610 not represented in the dataset	Glyma15g08610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08610

Paralog	Evidence	Comments
Glyma13g30670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g079600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g08610

Limit To All Plant Sequences

>Glyma15g08610.4   sequence type=transcript   gene model=Glyma15g08610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAACCGATGAAGATAAAAGAATGTTAATAAATACACGGAATTAGAAAAGGGGAAAAAATATTTAAACATATGAGAAAATTAAAGTATCCAAAACGATAAAGATAAATAAAAGATGCAATTGCAATTGGTGTCGCCGTGTAGGGTTCCACGTGTAGGAGGTGCAGTGGTAGTGGGAGGCATTCATAGAATTGGGACCTTGACCTCCACTGTCACCGTGAGAAGAAGAAGTAAAGCAGTGACTACTGCAATGCGAGCGGTGGTTCAGCGCGTGGCCTCTGCCTCCGTCGAGGTCGAAGGCCGCATCGTCTCCGAGATTGGCCCCGGCCTTCTCGTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTCACGTAGCCATGGCGCCTCAGAGAGCCAAGCCCTTCTATGCCTCTTTAGTTGACAGGTTTAGGAACGCCTATAACTCTGATGCAATCAAGGACGGTGTATTTGGAGCAATGATGAAGGTAAATTTGGTTAATGATGGACCAGTTACCATGCAGCTTGATTCAAATTCACCAAATTGATGCAGCAGAATCTTGATCAGTGGTTGATCTGGCTTGATGAAATTGAGCTTGAATTTTGGCTCTTCCGTCAGAAAGACCAAATGCAAGACACACATTATGTGTTATTCATTCTAGTTGAAGTTCTTTCTCCCCCAATGTAGTGACTAGTGACCCCACTTTGTAACACTATTTAGTTCAAAGAATGCCTTAGATTGTCCCTGTTCGTTCTGCCATAGCTCATATGGGAATAGAGTTTGGAACCCTTTTGGACTAAACAAGCTAATACCGGATGACTACTAATCCGGGTTACCCTTATTCAAGGTTGTATTTTAACTGGTTCCATCCAATATTGTTAAATAACCATTATAATGCCACCATAAAGCTATAACATGCCGTTTTTTTATTCGTCTGCCATAAGCAATTTGTGAAGGGAGGCCGGACAGCGCCATTGGCTGCAATGGCATGTTTATATGATGGAATTTTGGCCTTCTGCCATATTCCACCATCTGCCATTGATAACCTTGGTTCCACCAATATAGCTGTTGAAGGTTCCACTCCCTTCCTAATATCTATTGTAGAACTGAACTTGAAACAAGATTTTGGGTTCTTTCAACTCTCC

>Glyma15g08610.5   sequence type=transcript   gene model=Glyma15g08610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAACCGATGAAGATAAAAGAATGTTAATAAATACACGGAATTAGAAAAGGGGAAAAAATATTTAAACATATGAGAAAATTAAAGTATCCAAAACGATAAAGATAAATAAAAGATGCAATTGCAATTGGTGTCGCCGTGTAGGGTTCCACGTGTAGGAGGTGCAGTGGTAGTGGGAGGCATTCATAGAATTGGGACCTTGACCTCCACTGTCACCGTGAGAAGAAGAAGTAAAGCAGTGACTACTGCAATGCGAGCGGTGGTTCAGCGCGTGGCCTCTGCCTCCGTCGAGGTCGAAGGCCGCATCGTCTCCGAGATTGGCCCCGGCCTTCTCGTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTCACGTAGCCATGGCGCCTCAGAGAGCCAAGCCCTTCTATGCCTCTTTAGTTGACAGGTTTAGGAACGCCTATAACTCTGATGCAATCAAGGACGGTGTATTTGGAGCAATGATGAAGGTAAAGTTATGCCCTTCAATCCCTGTGCAGGGTGCCTTTATTGCGTGACAATTTCTAATGCTGCCTGTGTTAACACTAAACAATCCTCAAACTTGTGATGGAGAGCAGGTAAATTTGGTTAATGATGGACCAGTTACCATGCAGCTTGATTCAAATTCACCAAAGAATACAGTTGATGCAGCAGAATCTTGATCAGTGGTTGATCTGGCTTGATGAAATTGAGCTTGAATTTTGGCTCTTCCGTCAGAAAGACCAAATGCAAGACACACATTATGTGTTATTCATTCTAGTTGAAGTTCTTTCTCCCCCAATGTAGTGACTAGTGACCCCACTTTGTAACACTATTTAGTTCAAAGAATGCCTTAGATTGTCCCTGTTCGTTCTGCCATAGCTCATATGGGAATAGAGTTTGGAACCCTTTTGGACTAAACAAGCTAATACCGGATGACTACTAATCCGGGTTACCCTTATTCAAGGTTGTATTTTAACTGGTTCCATCCAATATTGTTAAATAACCATTATAATGCCACCATAAAGCTATAACATGCCGTTTTTTTATTCGTCTGCCATAAGCAATTTGTGAAGGGAGGCCGGACAGCGCCATTGGCTGCAATGGCATGTTTATATGATGGAATTTTGGCCTTCTGCCATATTCCACCATCTGCCATTGATAACCTTGGTTCCACCAATATAGCTGTTGAAGGTTCCACTCCCTTCCTAATATCTATTGTAGAACTGAACTTGAAACAAGATTTTGGGTTCTTTCAACTCTCC

Coding sequences of Glyma15g08610

Limit To All Plant Sequences

>Glyma15g08610.3   sequence type=CDS   gene model=Glyma15g08610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTGCAATTGGTGTCGCCGTGTAGGGTTCCACGTGTAGGAGGTGCAGTGGTAGTGGGAGGCATTCATAGAATTGGGACCTTGACCTCCACTGTCACCGTGAGAAGAAGAAGTAAAGCAGTGACTACTGCAATGCGAGCGGTGGTTCAGCGCGTGGCCTCTGCCTCCGTCGAGGTCGAAGGCCGCATCGTCTCCGAGATTGGCCCCGGCCTTCTCGTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTCACGTAGCCATGGCGCCTCAGAGAGCCAAGCCCTTCTATGCCTCTTTAGTTGACAGGTTTAGGAACGCCTATAACTCTGATGCAATCAAGGACGGTGTATTTGGAGCAATGATGAAGGTAAATTTGGTTAATGATGGACCAGTTACCATGCAGCTTGATTCAAATTCACCAAAGAATACAGTTGATGCAGCAGAATCTTGA

>Glyma15g08610.4   sequence type=CDS   gene model=Glyma15g08610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTGCAATTGGTGTCGCCGTGTAGGGTTCCACGTGTAGGAGGTGCAGTGGTAGTGGGAGGCATTCATAGAATTGGGACCTTGACCTCCACTGTCACCGTGAGAAGAAGAAGTAAAGCAGTGACTACTGCAATGCGAGCGGTGGTTCAGCGCGTGGCCTCTGCCTCCGTCGAGGTCGAAGGCCGCATCGTCTCCGAGATTGGCCCCGGCCTTCTCGTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTCACGTAGCCATGGCGCCTCAGAGAGCCAAGCCCTTCTATGCCTCTTTAGTTGACAGGTTTAGGAACGCCTATAACTCTGATGCAATCAAGGACGGTGTATTTGGAGCAATGATGAAGGTAAATTTGGTTAATGATGGACCAGTTACCATGCAGCTTGATTCAAATTCACCAAATTGA

>Glyma15g08610.5   sequence type=CDS   gene model=Glyma15g08610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTGCAATTGGTGTCGCCGTGTAGGGTTCCACGTGTAGGAGGTGCAGTGGTAGTGGGAGGCATTCATAGAATTGGGACCTTGACCTCCACTGTCACCGTGAGAAGAAGAAGTAAAGCAGTGACTACTGCAATGCGAGCGGTGGTTCAGCGCGTGGCCTCTGCCTCCGTCGAGGTCGAAGGCCGCATCGTCTCCGAGATTGGCCCCGGCCTTCTCGTCCTCGTCGGAATCCACGACTCCGATTCCGACGCCGACGCCGATTACATATGCCGAAAGGTCTTGAACATGAGGCTGTTCCCAAATGAAAATACGGGCAAAGCGTGGGACCACAGTGTGATGCAGAAAAATTATCAAGTCTTATTGGTGAGTCAGTTTACGTTGTATGGATTCCTGAAGGGTAACAAACCGGATTTTCACGTAGCCATGGCGCCTCAGAGAGCCAAGCCCTTCTATGCCTCTTTAGTTGACAGGTTTAGGAACGCCTATAACTCTGATGCAATCAAGGACGGTGTATTTGGAGCAATGATGAAGGTAAAGTTATGCCCTTCAATCCCTGTGCAGGGTGCCTTTATTGCGTGA

Predicted protein sequences of Glyma15g08610

Limit To All Plant Sequences

>Glyma15g08610.3   sequence type=predicted peptide   gene model=Glyma15g08610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLQLVSPCRVPRVGGAVVVGGIHRIGTLTSTVTVRRRSKAVTTAMRAVVQRVASASVEVEGRIVSEIGPGLLVLVGIHDSDSDADADYICRKVLNMRLFPNENTGKAWDHSVMQKNYQVLLVSQFTLYGFLKGNKPDFHVAMAPQRAKPFYASLVDRFRNAYNSDAIKDGVFGAMMKVNLVNDGPVTMQLDSNSPKNTVDAAES*

>Glyma15g08610.4   sequence type=predicted peptide   gene model=Glyma15g08610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLQLVSPCRVPRVGGAVVVGGIHRIGTLTSTVTVRRRSKAVTTAMRAVVQRVASASVEVEGRIVSEIGPGLLVLVGIHDSDSDADADYICRKVLNMRLFPNENTGKAWDHSVMQKNYQVLLVSQFTLYGFLKGNKPDFHVAMAPQRAKPFYASLVDRFRNAYNSDAIKDGVFGAMMKVNLVNDGPVTMQLDSNSPN*

>Glyma15g08610.5   sequence type=predicted peptide   gene model=Glyma15g08610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLQLVSPCRVPRVGGAVVVGGIHRIGTLTSTVTVRRRSKAVTTAMRAVVQRVASASVEVEGRIVSEIGPGLLVLVGIHDSDSDADADYICRKVLNMRLFPNENTGKAWDHSVMQKNYQVLLVSQFTLYGFLKGNKPDFHVAMAPQRAKPFYASLVDRFRNAYNSDAIKDGVFGAMMKVKLCPSIPVQGAFIA*

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