Glyma15g08550 - SoyBase

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Report for Sequence Feature Glyma15g08550

Feature Type:	gene_model
Chromosome:	Gm15
Start:	6054236
stop:	6057912
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29810	AT	Annotation by Michelle Graham. TAIR10: Transcriptional coactivator/pterin dehydratase \| chr1:10435606-10437406 REVERSE LENGTH=187	SoyBase	E_val: 3.00E-60	ISS
GO:0006729	GO-bp	Annotation by Michelle Graham. GO Biological Process: tetrahydrobiopterin biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004160	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dihydroxy-acid dehydratase activity	SoyBase	N/A	ISS
GO:0008124	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	SoyBase	N/A	ISS
KOG4073	KOG	Pterin carbinolamine dehydratase PCBD/dimerization cofactor of HNF1	JGI		ISS
PTHR12599	Panther	PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE	JGI		ISS
PF01329	PFAM	Pterin 4 alpha carbinolamine dehydratase	JGI		ISS
UniRef100_G7KDI6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PCD/DCoH-like protein n=1 Tax=Medicago truncatula RepID=G7KDI6_MEDTR	SoyBase	E_val: 2.00E-66	ISS
UniRef100_I1MEN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEN9_SOYBN	SoyBase	E_val: 6.00E-131	ISS

Expression Patterns of Glyma15g08550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g08550 not represented in the dataset	Glyma15g08550 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08550

Paralog	Evidence	Comments
Glyma13g30730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g079000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g08550

Limit To All Plant Sequences

>Glyma15g08550.3   sequence type=transcript   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCGAGAATGAGAAAAAATGCAGCGCTTCAACTCATACGGAGTCCTCAGCTCAAAACATAGTGGGACACAACTGAATACTTCAAAATTCAAATTAGGCCTCCTTCTCTGTGCAGCTTCCACCAAATGAATCGCCTTCTTCTTGTTCGTCACCCTCTACTAGCTTTATCCAAGCTACCACCACTATCACCCTTTTCCCAAACCTATTATTATTCATACACACCCACACGGATAAATTCTCAAATATATAAGATTAAGGACCCTCCTCGCACAAGCGCTGCATTTTGCACTACCAACAAAGAGTTGTCATCTAAGAAGTGTGTACCGTGCAATACAAAGGACTTGCAACCCATGACTGAGGATGCAGCAGGCACTCTGCTTTCCCAGATTGCCCAGTGGAATTTGGTAAACGAGGGTGGTGTGTTGAAATTGAGGAGATCATGGAAAGTAAAGACTTTTACCAAAGGATTGGAATTTTTCAGGATAATAGCTGATCTTGCTGATGCGGAAGGTCATCATCCTGATCTTCACCTTGTTGCCTGGAATAATGTTACTATAGAGATTTGTACACATTCTGTAGGTGGGCTGACGCAGAATGACTTCATTCTAGCTGCTAAGATCAATGAGCTTAATTTGCATGACTTGCTAAGACGGAAGGCTTCTGACTGAATTATCAAACAAGAAATTGAAGAAATCCAAGTGTTGCCCTTGCTCAGAGTTCTTGGAAAGCCTCTTAACAGTGATCTCTGTCCCATTGGAAATTACACTTTGTTTGGATTATAGAGAATGTGAACAATATAATACTTTGGTGTAAAATAATCATGTCAGTAACACAGTTTCAAAGCCATCTTCTCCCAATTTGTTGTGTCTGTAAGAGCCATTAGTGGCATAAAATACGGTTGATTAATCAATTACTGGAATGTCAATGTCTTCCATCTCCCTTCTGCGAATGCATTCCTTCACACAGATTATTTTCAATATCCCTGGAAAAAAATTTACTGGGAATGATTAAAAATATATCAGAATTCCAAGCATTTGGAGGGAATTCTCATCAGCAGTGGGATAAGTACCTAGACTGATTAGGTTACCTGGGTAGAATAGGTTTTCCAAGTCTCTCAATGAGGCACATTTAAATCTTATTGTGAGGTTCGTCTTGGAATTGAGGTTTTTTTTTATATGTGGTT

>Glyma15g08550.4   sequence type=transcript   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCGAGAATGAGAAAAAATGCAGCGCTTCAACTCATACGGAGTCCTCAGCTCAAAACATAGTGGGACACAACTGAATACTTCAAAATTCAAATTAGGCCTCCTTCTCTGTGCAGCTTCCACCAAATGAATCGCCTTCTTCTTGTTCGTCACCCTCTACTAGCTTTATCCAAGCTACCACCACTATCACCCTTTTCCCAAACCTATTATTATTCATACACACCCACACGGATAAATTCTCAAATATATAAGATTAAGGACCCTCCTCGCACAAGCGCTGCATTTTGCACTACCAACAAAGAGTTGTCATCTAAGAAGTGTGTACCGTGCAATACAAAGGACTTGCAACCCATGACTGAGGATGCAGCAGGCACTCTGCTTTCCCAGATTGCCCAGTGGAATTTGGTAAACGAGGGTGGTGTGTTGAAATTGAGGAGATCATGGAAAGTAAAGACTTTTACCAAAGGATTGGAATTTTTCAGGATAATAGCTGATCTTGCTGATGCGGAAGGTGGGCTGACGCAGAATGACTTCATTCTAGCTGCTAAGATCAATGAGCTTAATTTGCATGACTTGCTAAGACGGAAGGCTTCTGACTGAATTATCAAACAAGAAATTGAAGAAATCCAAGTGTTGCCCTTGCTCAGAGTTCTTGGAAAGCCTCTTAACAGTGATCTCTGTCCCATTGGAAATTACACTTTGTTTGGATTATAGAGAATGTGAACAATATAATACTTTGGTGTAAAATAATCATGTCAGTAACACAGTTTCAAAGCCATCTTCTCCCAATTTGTTGTGTCTGTAAGAGCCATTAGTGGCATAAAATACGGTTGATTAATCAATTACTGGAATGTCAATGTCTTCCATCTCCCTTCTGCGAATGCATTCCTTCACACAGATTATTTTCAATATCCCTGGAAAAAAATTTACTGGGAATGATTAAAAATATATCAGAATTCCAAGCATTTGGAGGGAATTCTCATCAGCAGTGGGATAAGTACCTAGACTGATTAGGTTACCTGGGTAGAATAGGTTTTCCAAGTCTCTCAATGAGGCACATTTAAATCTTATTGTGAGGTTCGTCTTGGAATTGAGGTTTTTTTTTATATGTGGTT

>Glyma15g08550.5   sequence type=transcript   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCGAGAATGAGAAAAAATGCAGCGCTTCAACTCATACGGAGTCCTCAGCTCAAAACATAGTGGGACACAACTGAATACTTCAAAATTCAAATTAGGCCTCCTTCTCTGTGCAGCTTCCACCAAATGAATCGCCTTCTTCTTGTTCGTCACCCTCTACTAGCTTTATCCAAGCTACCACCACTATCACCCTTTTCCCAAACCTATTATTATTCATACACACCCACACGGATAAATTCTCAAATATATAAGATTAAGGACCCTCCTCGCACAAGCGCTGCATTTTGCACTACCAACAAAGAGTTGTCATCTAAGAAGTGTGTACCGTGCAATACAAAGGACTTGCAACCCATGACTGAGGATGCAGCAGGCACTCTGCTTTCCCAGATTGCCCAGTGGAATTTGGTAAACGAGGGTGGTGTGTTGAAATTGAGGAGATCATGGAAAGTAAAGACTTTTACCAAAGGATTGGAATTTTTCAGGATAATAGCTGATCTTGCTGATGCGGAAGGTGGGCTGACGCAGAATGACTTCATTCTAGCTGCTAAGATCAATGAGCTTAATTTGCATGACTTGCTAAGACGGAAGGCTTCTGACTGAATTATCAAACAAGAAATTGAAGAAATCCAAGTGTTGAATGGTAATTGTCAAAGAGAACCATTGACCAAAGTAAGGTATTCCAAGCTTCTGTTGGGCATGAACTCGTAAACAAGTATTTCTCTTTTTGCTGAATGCAACAGCCAAGAAGCTTTACATGATTGGTGCTGAAATTTGGCTATTATCTGAACTTCAGTTTTGAACCTCCTGCAGCCCTTGCTCAGAGTTCTTGGAAAGCCTCTTAACAGTGATCTCTGTCCCATTGGAAATTACACTTTGTTTGGATTATAGAGAATGTGAACAATATAATACTTTGGTGTAAAATAATCATGTCAGTAACACAGTTTCAAAGCCATCTTCTCCCAATTTGTTGTGTCTGTAAGAGCCATTAGTGGCATAAAATACGGTTGATTAATCAATTACTGGAATGTCAATGTCTTCCATCTCCCTTCTGCGAATGCATTCCTTCACACAGATTATTTTCAATATCCCTGGAAAAAAATTTACTGGGAATGATTAAAAATATATCAGAATTCCAAGCATTTGGAGGGAATTCTCATCAGCAGTGGGATAAGTACCTAGACTGATTAGGTTACCTGGGTAGAATAGGTTTTCCAAGTCTCTCAATGAGGCACATTTAAATCTTATTGTGAGGTTCGTCTTGGAATTGAGGTTTTTTTTTATATGTGGTT

>Glyma15g08550.6   sequence type=transcript   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCGAGAATGAGAAAAAATGCAGCGCTTCAACTCATACGGAGTCCTCAGCTCAAAACATAGTGGGACACAACTGAATACTTCAAAATTCAAATTAGGCCTCCTTCTCTGTGCAGCTTCCACCAAATGAATCGCCTTCTTCTTGTTCGTCACCCTCTACTAGCTTTATCCAAGCTACCACCACTATCACCCTTTTCCCAAACCTATTATTATTCATACACACCCACACGGATAAATTCTCAAATATATAAGATTAAGGACCCTCCTCGCACAAGCGCTGCATTTTGCACTACCAACAAAGAGTTGTCATCTAAGAAGTGTGTACCGTGCAATACAAAGGACTTGCAACCCATGACTGAGGATGCAGCAGGCACTCTGCTTTCCCAGATTGCCCAGTGGAATTTGGTAAACGAGGGTGGTGTGTTGAAATTGAGGAGATCATGGAAAGTAAAGACTTTTACCAAAGGATTGGAATTTTTCAGGATAATAGCTGATCTTGCTGATGCGGAAGGTCATCATCCTGATCTTCACCTTGTTGCCTGGAATAATGTTACTATAGAGATTTGTACACATTCTGTAGCTCTACATTCGTGACATTCATTTTATGTTGACAATATTGTAACTGGAAGTTCCAGTTTAGAAATCTGTCAACTTATCTTGCAGCTTCATTCCAAATTTGCATTAAAATACCTTGGACCTCTACACTACTTGGGTATTGAGGTCATTCCTACATCTATGGATGGTCTCCTACTATTGTAGACCAAATACATTTGTGAATTGCTTCAAAGAGATAATATGGCTGATTCTAAGCCCCTGCCTACACCCATGGTTCCTGGTCTATAGCTATTAGCTTAGGGTACAAATGCAGTGCCTGATCCTTCTCTTTACTGATTTATTGTTGATCTCTCTAAAATGTTACAATCACTTGACCTAGCGTATACTTCTCTGTTAGCTTAATCAAG

Coding sequences of Glyma15g08550

Limit To All Plant Sequences

>Glyma15g08550.2   sequence type=CDS   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCGCCTTCTTCTTGTTCGTCACCCTCTACTAGCTTTATCCAAGCTACCACCACTATCACCCTTTTCCCAAACCTATTATTATTCATACACACCCACACGGATAAATTCTCAAATATATAAGATTAAGGACCCTCCTCGCACAAGCGCTGCATTTTGCACTACCAACAAAGAGTTGTCATCTAAGAAGTGTGTACCGTGCAATACAAAGGACTTGCAACCCATGACTGAGGATGCAGCAGGCACTCTGCTTTCCCAGATTGCCCAGTGGAATTTGGTAAACGAGGGTGGTGTGTTGAAATTGAGGAGATCATGGAAAGTAAAGACTTTTACCAAAGGATTGGAATTTTTCAGGATAATAGCTGATCTTGCTGATGCGGAAGGTCATCATCCTGATCTTCACCTTGTTGCCTGGAATAATGTTACTATAGAGATTTGTACACATTCTGTAGGTGGGCTGACGCAGAATGACTTCATTCTAGCTGCTAAGATCAATGAGCTTAATTTGCATGACTTGCTAAGACGGAAGGCTTCTGACTGA

>Glyma15g08550.3   sequence type=CDS   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCGCCTTCTTCTTGTTCGTCACCCTCTACTAGCTTTATCCAAGCTACCACCACTATCACCCTTTTCCCAAACCTATTATTATTCATACACACCCACACGGATAAATTCTCAAATATATAAGATTAAGGACCCTCCTCGCACAAGCGCTGCATTTTGCACTACCAACAAAGAGTTGTCATCTAAGAAGTGTGTACCGTGCAATACAAAGGACTTGCAACCCATGACTGAGGATGCAGCAGGCACTCTGCTTTCCCAGATTGCCCAGTGGAATTTGGTAAACGAGGGTGGTGTGTTGAAATTGAGGAGATCATGGAAAGTAAAGACTTTTACCAAAGGATTGGAATTTTTCAGGATAATAGCTGATCTTGCTGATGCGGAAGGTCATCATCCTGATCTTCACCTTGTTGCCTGGAATAATGTTACTATAGAGATTTGTACACATTCTGTAGGTGGGCTGACGCAGAATGACTTCATTCTAGCTGCTAAGATCAATGAGCTTAATTTGCATGACTTGCTAAGACGGAAGGCTTCTGACTGA

>Glyma15g08550.4   sequence type=CDS   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCGCCTTCTTCTTGTTCGTCACCCTCTACTAGCTTTATCCAAGCTACCACCACTATCACCCTTTTCCCAAACCTATTATTATTCATACACACCCACACGGATAAATTCTCAAATATATAAGATTAAGGACCCTCCTCGCACAAGCGCTGCATTTTGCACTACCAACAAAGAGTTGTCATCTAAGAAGTGTGTACCGTGCAATACAAAGGACTTGCAACCCATGACTGAGGATGCAGCAGGCACTCTGCTTTCCCAGATTGCCCAGTGGAATTTGGTAAACGAGGGTGGTGTGTTGAAATTGAGGAGATCATGGAAAGTAAAGACTTTTACCAAAGGATTGGAATTTTTCAGGATAATAGCTGATCTTGCTGATGCGGAAGGTGGGCTGACGCAGAATGACTTCATTCTAGCTGCTAAGATCAATGAGCTTAATTTGCATGACTTGCTAAGACGGAAGGCTTCTGACTGA

>Glyma15g08550.5   sequence type=CDS   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCGCCTTCTTCTTGTTCGTCACCCTCTACTAGCTTTATCCAAGCTACCACCACTATCACCCTTTTCCCAAACCTATTATTATTCATACACACCCACACGGATAAATTCTCAAATATATAAGATTAAGGACCCTCCTCGCACAAGCGCTGCATTTTGCACTACCAACAAAGAGTTGTCATCTAAGAAGTGTGTACCGTGCAATACAAAGGACTTGCAACCCATGACTGAGGATGCAGCAGGCACTCTGCTTTCCCAGATTGCCCAGTGGAATTTGGTAAACGAGGGTGGTGTGTTGAAATTGAGGAGATCATGGAAAGTAAAGACTTTTACCAAAGGATTGGAATTTTTCAGGATAATAGCTGATCTTGCTGATGCGGAAGGTGGGCTGACGCAGAATGACTTCATTCTAGCTGCTAAGATCAATGAGCTTAATTTGCATGACTTGCTAAGACGGAAGGCTTCTGACTGA

>Glyma15g08550.6   sequence type=CDS   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCGCCTTCTTCTTGTTCGTCACCCTCTACTAGCTTTATCCAAGCTACCACCACTATCACCCTTTTCCCAAACCTATTATTATTCATACACACCCACACGGATAAATTCTCAAATATATAAGATTAAGGACCCTCCTCGCACAAGCGCTGCATTTTGCACTACCAACAAAGAGTTGTCATCTAAGAAGTGTGTACCGTGCAATACAAAGGACTTGCAACCCATGACTGAGGATGCAGCAGGCACTCTGCTTTCCCAGATTGCCCAGTGGAATTTGGTAAACGAGGGTGGTGTGTTGAAATTGAGGAGATCATGGAAAGTAAAGACTTTTACCAAAGGATTGGAATTTTTCAGGATAATAGCTGATCTTGCTGATGCGGAAGGTCATCATCCTGATCTTCACCTTGTTGCCTGGAATAATGTTACTATAGAGATTTGTACACATTCTGTAGCTCTACATTCGTGA

Predicted protein sequences of Glyma15g08550

Limit To All Plant Sequences

>Glyma15g08550.2   sequence type=predicted peptide   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRLLLVRHPLLALSKLPPLSPFSQTYYYSYTPTRINSQIYKIKDPPRTSAAFCTTNKELSSKKCVPCNTKDLQPMTEDAAGTLLSQIAQWNLVNEGGVLKLRRSWKVKTFTKGLEFFRIIADLADAEGHHPDLHLVAWNNVTIEICTHSVGGLTQNDFILAAKINELNLHDLLRRKASD*

>Glyma15g08550.3   sequence type=predicted peptide   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRLLLVRHPLLALSKLPPLSPFSQTYYYSYTPTRINSQIYKIKDPPRTSAAFCTTNKELSSKKCVPCNTKDLQPMTEDAAGTLLSQIAQWNLVNEGGVLKLRRSWKVKTFTKGLEFFRIIADLADAEGHHPDLHLVAWNNVTIEICTHSVGGLTQNDFILAAKINELNLHDLLRRKASD*

>Glyma15g08550.4   sequence type=predicted peptide   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRLLLVRHPLLALSKLPPLSPFSQTYYYSYTPTRINSQIYKIKDPPRTSAAFCTTNKELSSKKCVPCNTKDLQPMTEDAAGTLLSQIAQWNLVNEGGVLKLRRSWKVKTFTKGLEFFRIIADLADAEGGLTQNDFILAAKINELNLHDLLRRKASD*

>Glyma15g08550.5   sequence type=predicted peptide   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRLLLVRHPLLALSKLPPLSPFSQTYYYSYTPTRINSQIYKIKDPPRTSAAFCTTNKELSSKKCVPCNTKDLQPMTEDAAGTLLSQIAQWNLVNEGGVLKLRRSWKVKTFTKGLEFFRIIADLADAEGGLTQNDFILAAKINELNLHDLLRRKASD*

>Glyma15g08550.6   sequence type=predicted peptide   gene model=Glyma15g08550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRLLLVRHPLLALSKLPPLSPFSQTYYYSYTPTRINSQIYKIKDPPRTSAAFCTTNKELSSKKCVPCNTKDLQPMTEDAAGTLLSQIAQWNLVNEGGVLKLRRSWKVKTFTKGLEFFRIIADLADAEGHHPDLHLVAWNNVTIEICTHSVALHS*

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