SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g08540

Feature Type:gene_model
Chromosome:Gm15
Start:6030626
stop:6034911
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g08540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G33860AT Annotation by Michelle Graham. TAIR10: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | chr2:14325444-14328613 REVERSE LENGTH=608 SoyBaseE_val: 0ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007389GO-bp Annotation by Michelle Graham. GO Biological Process: pattern specification process SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0009725GO-bp Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009850GO-bp Annotation by Michelle Graham. GO Biological Process: auxin metabolic process SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0010050GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative phase change SoyBaseN/AISS
GO:0010051GO-bp Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation SoyBaseN/AISS
GO:0010158GO-bp Annotation by Michelle Graham. GO Biological Process: abaxial cell fate specification SoyBaseN/AISS
GO:0048438GO-bp Annotation by Michelle Graham. GO Biological Process: floral whorl development SoyBaseN/AISS
GO:0048439GO-bp Annotation by Michelle Graham. GO Biological Process: flower morphogenesis SoyBaseN/AISS
GO:0048519GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF02362PFAM B3 DNA binding domain JGI ISS
PF06507PFAM Auxin response factor JGI ISS
UniRef100_D3GBU7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin response factor 3b n=1 Tax=Lotus japonicus RepID=D3GBU7_LOTJA SoyBaseE_val: 0ISS
UniRef100_UPI000233AE83UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233AE83 related cluster n=1 Tax=unknown RepID=UPI000233AE83 SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g08540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08540
ParalogEvidenceComments
Glyma13g30750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g078800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g08540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g08540
>Glyma15g08540.2   sequence type=CDS   gene model=Glyma15g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTGATCGATCTGAACACCACGGAGGATGATGAAGCTGCTCCATTATCTGCTTCTTCTTCTCACTCGGGGATAAGCACTTCTGCTTCAACCTTGGTTGTTTCTCCTCCTCCTTCTGTGTGCTTGGAACTGTGGCACGCGTGTGCGGGCCCTTTGATCTCTCTGCCTAAGAGAGGAAGTGTTGTTGTTTACTTGCCACAGGGACACTTTGAGCATGTTCAGGATTTTCCGGTCAATGCTTTTGATATCCCACCCCATGTGTTCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGGAGTGATGAAGTGTACTGCCAAGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGCATAGCTTGCGGGAAGGGGAAATTGTTGCTGATGGGGAAGAGGAGGATACTGGAGCTACGGTGAAGTCAACAACTCCCCATATGTTCTGCAAGACTCTCACAGCTTCAGACACCAGCACTCATGGTGGATTCTCAGTTCCCCGTCGGGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAAGAACTTGTGGCAAAGGATCTTCATGGCCTGGAATGGAGGTTTCGTCATATATATAGGGGCCAACCACGGAGGCATTTGCTCACAACTGGGTGGAGTGCATTTGTGAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTATTGTTTCTTAGGGGCAATGATGGAGAACTGAGATTAGGGATTCGCAGGGCAGCTCAGTTGAAATGGGCTGGTTCCTTTGCAGTTCCCTCAGGTCAGCAATTGAATCCTGCAACTCTCATGGATGTTGTTAATGCATTATCTACAAGATGTGCATTTAGTGTTTGCTATAATCCAAGCCTTGACTGTTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCGGCAGATCGAAGATTCACTGGATTAATTGCTGGAATTAGTGATGTTGATCCTGTTAGATGGCCCGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATAGAAGCTGCTAGGCACAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCAAATTCCAGTAACTTGATGGCAGCTGGTTTGAAGAGGAACAGGATTGAAATGACTTCAGCAAAGCTGGAATTTCCCAATCCCAATGGGATTCAAACATCAGACTTTGGGGAATCGTTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTCCCCCCTTTGATGGTATTAATGCTCAGAGTCCCTGGTTATACGAGTTAGGGAGGTGCTATCCTGGTTCAAACTGTTCTGGGATTCCTCCAACAGGAAATAACATCAGAGTGCCGCATCCGGCATCTGATTTTTCCTGCAATGGCATAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCAACCATATGGAAGAGCCTTATCTATTGAGGAGGCTCGAGCAAATGGTCGCTATGGATTTTATGATGGCTGTCAGTTACTTAACTCCAGAAATGGATGGTCTGCACAGATGCATGACAATGCTTCACATTTGCATGCATCTGTTACACCTGCGCAAGTGTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTTAATCCAGTTTCAAACTGTGATTATAACATTAACAAATGTAATAAGGAAATGGAGGGTAGAATCCATTATCAAGGCTTATACACATCTGAAATGAAAGGTAGAACATTGGCATCTTCCCCATCTGACGATCTTATTGTATCTAGGCGAGCTCCAGAGGGTGCTAGTTCTATAGGTATGTTTGATGTTCATAATCAGTTGGGTAGTTCACAGTTACATGAATCAGTGTCAGCATTGAGAAGCAGTCAAAAGTTGGTTTCCTCATGTAAAAGTAGTTGCAGACTCTTTGGTTTTTCATTGACTGAGGACACACATGTTGCAAATGAAGAGGTATCAGCCTCTACCATCACTTTACCATTGAAGTGTATTGCAGTATTGAGCTTAGAATCATGA
Predicted protein sequences of Glyma15g08540
>Glyma15g08540.2   sequence type=predicted peptide   gene model=Glyma15g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLIDLNTTEDDEAAPLSASSSHSGISTSASTLVVSPPPSVCLELWHACAGPLISLPKRGSVVVYLPQGHFEHVQDFPVNAFDIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEHSLREGEIVADGEEEDTGATVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGNDGELRLGIRRAAQLKWAGSFAVPSGQQLNPATLMDVVNALSTRCAFSVCYNPSLDCSYSVGMRFRMRFETEDAADRRFTGLIAGISDVDPVRWPGSKWRCLLVRWDDIEAARHNRVSPWEIEPSGSASNSSNLMAAGLKRNRIEMTSAKLEFPNPNGIQTSDFGESLRFRKVLQGQEILGVNTPPFDGINAQSPWLYELGRCYPGSNCSGIPPTGNNIRVPHPASDFSCNGIGFSESFRFQKVLQGQEILPSQPYGRALSIEEARANGRYGFYDGCQLLNSRNGWSAQMHDNASHLHASVTPAQVSSPSSVLMFQQAVNPVSNCDYNINKCNKEMEGRIHYQGLYTSEMKGRTLASSPSDDLIVSRRAPEGASSIGMFDVHNQLGSSQLHESVSALRSSQKLVSSCKSSCRLFGFSLTEDTHVANEEVSASTITLPLKCIAVLSLES*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo