Glyma15g08480 - SoyBase

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Report for Sequence Feature Glyma15g08480

Feature Type:	gene_model
Chromosome:	Gm15
Start:	6001686
stop:	6005295
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28500	AT	Annotation by Michelle Graham. TAIR10: NAC domain containing protein 73 \| chr4:14083014-14084266 FORWARD LENGTH=305	SoyBase	E_val: 1.00E-119	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:2000652	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of secondary cell wall biogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_A2Q521	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC domain-containing protein n=1 Tax=Medicago truncatula RepID=A2Q521_MEDTR	SoyBase	E_val: 8.00E-146	ISS
UniRef100_I1MEN3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEN3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g08480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08480

Paralog	Evidence	Comments
Glyma13g30800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g078300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g08480

Limit To All Plant Sequences

>Glyma15g08480.4   sequence type=transcript   gene model=Glyma15g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGCTAGTAAAGTTTTAATATTAATCCATGTATAATAACGATACCCTTTTTAATTAATTACTTAATTAGGTCAGGTGCAATTAGTTGTTGTATCCGAAAAAAGTCTTCCTAAATAGCTAGGACGCACTTATTCCGTGGTAAAAGCGTATATACGAGAGCGTAGCCAAACGTGACCTCCAAGCAACCTTCCCTATATCTAGACCCACCCTTTATTTCTTACCTTTTTTTTTATATCCTCTCTCTCTCTCTCTCTCTCTGAACAAGACCCAGCCAGCCGTTAGGGAAATCAAGCACAGCTCAATCATTGAATCTTAGCATAAACACATACAGAAGAAGGAAAAGTGGCACCCTGGGAGGAGCTGATATTGAAGGAGGGTTTGGAAGAAAAAGAATTTTGTTTTGAGATATATATACATATATGTGCAAGTGCATAGGAAATTAACACAAAAAGATGACATGGTGCAATGACTCTGATGAGGATAGGGTTATTGAATCAACGACGCCAACAATAACTATTACTCCTAACACTGATGGCATAAAGCTCACCGAAGAAATTAGAACCATAACATGCCCCTCGTGCGGCCATAACATTGAATTCAAAGATCAGGGTGGAATCCATGACTTGCCGGGGTTACCAGCTGGAGTGAAGTTTGACCCAAATGACCAAGAAATATTAGAACATTTGGAGGCAAAAGTGGCGTCTGATGCATGCAAGCTTCATCCCCTTATTGACGAGTTCATACCAACGCTTGAAGGCGAAAATGGGATCTGTTATACACACCCAGAAAAGCTACCAGGTGTTAGCAAAGATGGACAGATCCGCCACTTCTTTCACAGGCCCTCAAAAGCATACACAACTGGAACGAGGAAAAGAAGAAAAGTTCACACTGATGATGAAGGAAGTGAAACAAGATGGCACAAAACGGGAAAAACTAGAGCAGTTTTTGCAGCAGCCGGTGGTGCAGTAAAAGGTTTTAAGAAAATACTAGTACTCTACACCAACTATGGAAGACAAAAGAAGCCTGAGAAAACTAATTGGGTGATGCATCAATACCATCTTGGCAGTACTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGGTCTTCTATCAGACACAACCTAGACAATGTGGCAATCCCATTATAATAAAGGATTCATACGAAAAAATGTTGAATGATGGAAGTGGCCAAGACAACATTAATATATCATTAATACCTAAAACTACTGCAACTCTTTTGGATTGCTACACTGCTCCTTACATAGATTATGATCACGTCCATGTGAGTCATAACAGGGAAAGTTCCTCACAACTAATTATTCCCAGCTCGGTTGTTCAAGTTGATGGCTCTTATATTCGCTTAACAATGGATGCAAAGAAAGCAAGATTTGAAAGTAACACTGGGAAGAGATTCTAGGCAGAGCAGCAATGACAAAGACTTGCATATAAATGTTCTCCATATTGTTTCCTTTACTAATTGATCAGTACGTAACATTATTTATATGTGGGATTAGAATGAAGGAATTTCAAGGGTTGGAAAAATAAGTTGGCTTCCTTATTAAGATCAATATGGTGCAGGCATGGTGGACTTAATTTCCCATAATTGACCCTGGTTGAAGTTGAGAGACAAGCAAGTTAGGTATATATATTTGCGGTACTGTAGTTTGATTTTAATTTTAGGGTACATGTATATTCGTAAAATGTGCTTATAGATATTACAATAGTAGCAGGGATATCGTTTATTGACTACTCTTCAGAACTATAGTCAGTCTATATACTGTATTTTGTCTAGAATTGAATTTTGCACCCCCTCAATCCTGAAAAAAATGCTGAGATGTTTCATTATTATTATATTATGCGTGTCAGCTACTTAATTTGCTGGGAAGTTTGTCCCTTGTAGTTTTCCCCCCTGTTTTCTTTGAAAGGTCGATTGTAAAATAAGGTGAAGACAGTAGATTTATCTTATTTATGGTTCTAAATTGCGGTTCCTTGTAGTTTTT

Coding sequences of Glyma15g08480

Limit To All Plant Sequences

>Glyma15g08480.3   sequence type=CDS   gene model=Glyma15g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATGGTGCAATGACTCTGATGAGGATAGGGTTATTGAATCAACGACGCCAACAATAACTATTACTCCTAACACTGATGGCATAAAGCTCACCGAAGAAATTAGAACCATAACATGCCCCTCGTGCGGCCATAACATTGAATTCAAAGATCAGGGTGGAATCCATGACTTGCCGGGGTTACCAGCTGGAGTGAAGTTTGACCCAAATGACCAAGAAATATTAGAACATTTGGAGGCAAAAGTGGCGTCTGATGCATGCAAGCTTCATCCCCTTATTGACGAGTTCATACCAACGCTTGAAGGCGAAAATGGGATCTGTTATACACACCCAGAAAAGCTACCAGGTGTTAGCAAAGATGGACAGATCCGCCACTTCTTTCACAGGCCCTCAAAAGCATACACAACTGGAACGAGGAAAAGAAGAAAAGTTCACACTGATGATGAAGGAAGTGAAACAAGATGGCACAAAACGGGAAAAACTAGAGCAGTTTTTGCAGCAGCCGGTGGTGCAGTAAAAGGTTTTAAGAAAATACTAGTACTCTACACCAACTATGGAAGACAAAAGAAGCCTGAGAAAACTAATTGGGTGATGCATCAATACCATCTTGGCAGTACTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGGTCTTCTATCAGACACAACCTAGACAATGTGGCAATCCCATTATAATAAAGGATTCATACGAAAAAATGTTGAATGATGGAAGTGGCCAAGACAACATTAATATATCATTAATACCTAAAACTACTGCAACTCTTTTGGATTGCTACACTGCTCCTTACATAGATTATGATCACGTCCATGTGAGTCATAACAGGGAAAGTTCCTCACAACTAATTATTCCCAGCTCGGTTGTTCAAGTTGATGGCTCTTATATTCGCTTAACAATGGATGCAAAGAAAGCAAGATTTGAAAGTAACACTGGGAAGAGATTCTAG

>Glyma15g08480.4   sequence type=CDS   gene model=Glyma15g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATGGTGCAATGACTCTGATGAGGATAGGGTTATTGAATCAACGACGCCAACAATAACTATTACTCCTAACACTGATGGCATAAAGCTCACCGAAGAAATTAGAACCATAACATGCCCCTCGTGCGGCCATAACATTGAATTCAAAGATCAGGGTGGAATCCATGACTTGCCGGGGTTACCAGCTGGAGTGAAGTTTGACCCAAATGACCAAGAAATATTAGAACATTTGGAGGCAAAAGTGGCGTCTGATGCATGCAAGCTTCATCCCCTTATTGACGAGTTCATACCAACGCTTGAAGGCGAAAATGGGATCTGTTATACACACCCAGAAAAGCTACCAGGTGTTAGCAAAGATGGACAGATCCGCCACTTCTTTCACAGGCCCTCAAAAGCATACACAACTGGAACGAGGAAAAGAAGAAAAGTTCACACTGATGATGAAGGAAGTGAAACAAGATGGCACAAAACGGGAAAAACTAGAGCAGTTTTTGCAGCAGCCGGTGGTGCAGTAAAAGGTTTTAAGAAAATACTAGTACTCTACACCAACTATGGAAGACAAAAGAAGCCTGAGAAAACTAATTGGGTGATGCATCAATACCATCTTGGCAGTACTGAAGAAGAGAAAGATGGAGAATTAGTTGTTTCAAAGGTCTTCTATCAGACACAACCTAGACAATGTGGCAATCCCATTATAATAAAGGATTCATACGAAAAAATGTTGAATGATGGAAGTGGCCAAGACAACATTAATATATCATTAATACCTAAAACTACTGCAACTCTTTTGGATTGCTACACTGCTCCTTACATAGATTATGATCACGTCCATGTGAGTCATAACAGGGAAAGTTCCTCACAACTAATTATTCCCAGCTCGGTTGTTCAAGTTGATGGCTCTTATATTCGCTTAACAATGGATGCAAAGAAAGCAAGATTTGAAAGTAACACTGGGAAGAGATTCTAG

Predicted protein sequences of Glyma15g08480

Limit To All Plant Sequences

>Glyma15g08480.3   sequence type=predicted peptide   gene model=Glyma15g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTWCNDSDEDRVIESTTPTITITPNTDGIKLTEEIRTITCPSCGHNIEFKDQGGIHDLPGLPAGVKFDPNDQEILEHLEAKVASDACKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAAAGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSTEEEKDGELVVSKVFYQTQPRQCGNPIIIKDSYEKMLNDGSGQDNINISLIPKTTATLLDCYTAPYIDYDHVHVSHNRESSSQLIIPSSVVQVDGSYIRLTMDAKKARFESNTGKRF*

>Glyma15g08480.4   sequence type=predicted peptide   gene model=Glyma15g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTWCNDSDEDRVIESTTPTITITPNTDGIKLTEEIRTITCPSCGHNIEFKDQGGIHDLPGLPAGVKFDPNDQEILEHLEAKVASDACKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVFAAAGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSTEEEKDGELVVSKVFYQTQPRQCGNPIIIKDSYEKMLNDGSGQDNINISLIPKTTATLLDCYTAPYIDYDHVHVSHNRESSSQLIIPSSVVQVDGSYIRLTMDAKKARFESNTGKRF*

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