Report for Sequence Feature Glyma15g08460
Feature Type: gene_model
Chromosome: Gm15
Start: 5982961
stop: 5985582
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g08460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G14600 AT
Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:4707518-4709022 FORWARD LENGTH=318
SoyBase E_val: 2.00E-167 ISS
GO:0030488 GO-bp
Annotation by Michelle Graham. GO Biological Process: tRNA methylation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016429 GO-mf
Annotation by Michelle Graham. GO Molecular Function: tRNA (adenine-N1-)-methyltransferase activity
SoyBase N/A ISS
KOG2915
KOG
tRNA(1-methyladenosine) methyltransferase, subunit GCD14
JGI ISS
PTHR12133 Panther
UNCHARACTERIZED METHYLTRANSFERASE
JGI ISS
PF08704 PFAM
tRNA methyltransferase complex GCD14 subunit
JGI ISS
UniRef100_B9S623 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: tRNA, putative n=1 Tax=Ricinus communis RepID=B9S623_RICCO
SoyBase E_val: 5.00E-174 ISS
UniRef100_I1MEN1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MEN1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g08460
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g08460
Paralog Evidence Comments
Glyma13g30820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g08460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g078000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g08460
Coding sequences of Glyma15g08460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g08460.1 sequence type=CDS gene model=Glyma15g08460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGTCCCTTCATCCTGCAAAAAAGTTATCATTTAATCGATCAATTAGTAATGGCGATTTAGTTATTGTTTATGAAAGGCATGACATCATGAAGGCTGTAACAGTGTGTGAGGGTTCAGTCCTGCAAAATCGTTTTGGTGTATTTAAGCATTCAGACTGGATAGGAAAGCCTTTTGGATCTAAAGTATTCAGCTGTAAGGGTGGCTTTGTGTACTTGTTAGCTCCCACACCAGAATTGTGGACTCTGGTATTGAACCACAGGACTCAGATTCTCTATATTGCGGATATTAGCTTTGTTATCATGTACTTGGAGATTGTTCCTGGTTGCGTGGTTCTTGAATCTGGAACTGGCAGTGGATCGTTGACTTCTTCGCTTGCAAGGGCAGTTGCTCCTTCAGGACACGTCTATACCTTTGATTTCCACGAACAAAGGGCTGCATCGGCTAGGGCTGATTTTGAGAGGACAGGTCTAAGCAGCTTAGTCACTGTTCAAGTTAGGGACATTCAGGGTGAAGGATTTCCTGATGACTTGACTGGCATGGCTGACTCTGTATTTTTGGATCTACCTCAACCTTGGCTTGCCATCCCTGCAGCTGCAAAAGTATTAAGACATGATGGCACACTGTGCTCTTTCTCTCCTTGTATTGAACAAGTACAACGAACATGTGAAACACTCCGAACCCGGTTCACAGACACAAGGACATTTGAGGTACTCTTACGCACGTATGAAGTTCGGGAAGAGAAAATGCAAAGCTTATGTGGGGATAGCAATGGTTCTGTTCCTAGCAAGAGGAAACAATGCTCTGGTGGAAGCTATGTACTAGGCAGCAGTCCATCTACTTCTTCTGTCATGGCTAGACCTTGTGGTGAAGCTCGAGGACACACGGGCTATTTGACATTTGCAAGAGTTAAATCACTCTCATGA
Predicted protein sequences of Glyma15g08460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g08460.1 sequence type=predicted peptide gene model=Glyma15g08460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLSLHPAKKLSFNRSISNGDLVIVYERHDIMKAVTVCEGSVLQNRFGVFKHSDWIGKPFGSKVFSCKGGFVYLLAPTPELWTLVLNHRTQILYIADISFVIMYLEIVPGCVVLESGTGSGSLTSSLARAVAPSGHVYTFDFHEQRAASARADFERTGLSSLVTVQVRDIQGEGFPDDLTGMADSVFLDLPQPWLAIPAAAKVLRHDGTLCSFSPCIEQVQRTCETLRTRFTDTRTFEVLLRTYEVREEKMQSLCGDSNGSVPSKRKQCSGGSYVLGSSPSTSSVMARPCGEARGHTGYLTFARVKSLS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
