Report for Sequence Feature Glyma15g08413
Feature Type: gene_model
Chromosome: Gm15
Start: 5956673
stop: 5957484
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g08413
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
UniRef100_C6TKC2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TKC2_SOYBN
SoyBase E_val: 2.00E-128 ISS
UniRef100_Q01197 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein E6 n=2 Tax=Gossypium hirsutum RepID=E6_GOSHI
SoyBase E_val: 6.00E-13 ISS
Expression Patterns of Glyma15g08413
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g08413
Paralog Evidence Comments
Glyma13g30950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g08413 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g077600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g08413
Coding sequences of Glyma15g08413
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g08413.1 sequence type=CDS gene model=Glyma15g08413 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCCCTCATCAAACTACATTTCTTTCCTTTTCCTCACTACGCTTTTGTTTGCTCTTCAAATCACTGCTAGAGACAGCCAGTTCTTCAGCAAAGTCACCCATTTCGACAAAGACAATGCCAAAGTGACAGAACTTCCCAACAAAGAAGCACCAGAAGTAAACAAGCCAGAGCAACAACCACCTTTCATTCCCGAGACTGAAACAGCTATGGCCTATATGTCTAACCAAGTCCCCTCCACCACCCCGACTTCTTACCACCCCTACAAGACCAAGTTTGAGAACTCCAACAACAAGTACTACAACAATGATGCCTATAACACAAGGTTCTCCGAAACCAGTTACAACAACAACAACAACAAGTATTACAACAAGGATTCTTATGAGGGTAACCAATATGAGTTAAGTGACACAAAGTACACAGAAGAAGGATACAACAACAAGTATCACAACTCCTATCAGAACAACTACAACAACGATGCTGCCAATGACAAATACTCCTACAACAACAACAACAACAACAAAAATTACAATGCTCACAATAACAGGTACAATACTTACAACAACAATGCTGTTAGCAGGTACAATGGTGAGAGGCAAGGAATGAGTGACACAAGGTTTTTGGAGGGTGGAAAGTACTTTTATGACGTTGGCGCGGAGAAGTACAATCCAACAAACTATGGTGACTCGTCTAGGGAAGTGAACACTAACAATTGGTACAACAACAGAGGTGTCAACTACAATGGATACCAGAACCAGGAGGAGTTTGAAGATGAGCATAAGAACTTTGAGCCATGA
Predicted protein sequences of Glyma15g08413
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g08413.1 sequence type=predicted peptide gene model=Glyma15g08413 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPSSNYISFLFLTTLLFALQITARDSQFFSKVTHFDKDNAKVTELPNKEAPEVNKPEQQPPFIPETETAMAYMSNQVPSTTPTSYHPYKTKFENSNNKYYNNDAYNTRFSETSYNNNNNKYYNKDSYEGNQYELSDTKYTEEGYNNKYHNSYQNNYNNDAANDKYSYNNNNNNKNYNAHNNRYNTYNNNAVSRYNGERQGMSDTRFLEGGKYFYDVGAEKYNPTNYGDSSREVNTNNWYNNRGVNYNGYQNQEEFEDEHKNFEP*