SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G33847 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14319280-14320522 REVERSE LENGTH=93 | SoyBase | E_val: 2.00E-25 | ISS |
| UniRef100_B3H5P1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear fusion defective 6 n=1 Tax=Arabidopsis thaliana RepID=B3H5P1_ARATH | SoyBase | E_val: 2.00E-10 | ISS |
| UniRef100_I1MEM1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEM1_SOYBN | SoyBase | E_val: 9.00E-95 | ISS |
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Glyma15g08400 not represented in the dataset |
Glyma15g08400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g30971 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g077400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g08400.6 sequence type=CDS gene model=Glyma15g08400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCGCCGCCAGGTGTTTGCTTCGCTCCGCCGCCTCCCGAGCAGCCGGTGCGGCCAATCTGGCTGCCGGAGCTAGACCGAGACCGGCACGATCTCCGTTTCGGCTCCCAAAGCAAACCTCAATCTCCAATCGCGTTTTTAGGTTACCGGTCGAAGCGAGTTTCTGCGTGGAATCGATGCTTCCTTATCACAGTGCTACTGCTTCCGCATTGCTGAATTCGATGCTCTCTGTGTCTCGCCACTCCTATGGTTGGACCCCTGAAGTTATTGTCTTCTTGAATTCTAGATGGATGATTGCTGTTTGTGGGTGCGGTGCATCTGCGCATACTTTGCATGGATTTCAGTTTACTTTGTTAGGCCTGCTTAGAGATTTTTCTCCTTGGTTGAATATGAAACCTGAAAGACTTGTAAATTGA
>Glyma15g08400.6 sequence type=predicted peptide gene model=Glyma15g08400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAARCLLRSAASRAAGAANLAAGARPRPARSPFRLPKQTSISNRVFRLPVEASFCVESMLPYHSATASALLNSMLSVSRHSYGWTPEVIVFLNSRWMIAVCGCGASAHTLHGFQFTLLGLLRDFSPWLNMKPERLVN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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