Glyma15g08300 - SoyBase

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Report for Sequence Feature Glyma15g08300

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5871360
stop:	5873073
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28330	AT	Annotation by Michelle Graham. TAIR10: dormancy-associated protein-like 1 \| chr1:9934252-9935216 REVERSE LENGTH=122	SoyBase	E_val: 1.00E-35	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05564	PFAM	Dormancy/auxin associated protein	JGI		ISS
UniRef100_A5JSU3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-repressed protein n=1 Tax=Sesbania drummondii RepID=A5JSU3_9FABA	SoyBase	E_val: 3.00E-44	ISS
UniRef100_I1MEL2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEL2_SOYBN	SoyBase	E_val: 2.00E-82	ISS

Proteins Associated with Glyma15g08300

Locus	Gene Symbol	Protein Name
	DRM1	DORMANCY-ASSOCIATED PROTEIN 1

Expression Patterns of Glyma15g08300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08300

Paralog	Evidence	Comments
Glyma13g31060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g076500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g08300

Limit To All Plant Sequences

>Glyma15g08300.2   sequence type=transcript   gene model=Glyma15g08300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGTCAGAGATATTTTTATTTTTAGACATCATCACTAACGATCACCCCTCTATATATATACAGCCTGCACAACCTCATTAGGAACCCCCCATTACTCACTTTTCATCCTTCGATCATACACTTAGTTGCTTCCAATTAAGATGGTTCTGCTAGAGAAGCTCTGGGATGATGTTGTGGCTGGCCCTCAACCTGAGCGTGGCCTTGGCAAGCTCAGAAAACTCACCACCCTCAAAACTATTGATGAAGGAGAAAGTAGCAAGCTGCAGAAGACGTTGTCGATGCCGTCGACACCAACAACCCCGATGACTCCGACGACTCCAACGACACCGGGATCGGCCCGTAAAGCTGACAACGTTTGGAGGAGCGTCTTCCATCCTGGGAGCAACTCCGCCACAAAGACCATCGGTGCTCAGATGTTTGACAAACCACTTCCCAACACTCCCACTGTCTATGACTGGCTGTACAGTGGGGAGACCAGAAGCAGGCACCGCTGAAGCTGAAGTCTTTAGCTAAGATGACCGTGGGTTGCATGTAAATATTGTCGTTTTTCGTTAAGCATCTGCCACGTTTGCAGCTACTATTACTATTATGTGTCGGGAATTTATTGCTCCGTTGCTGACTCAAACATAATATTACTAGCGTGTTTGGTTTTTTTGAGCAAGTGAATGTAAAAATGCTAAATAATTCGTTAGTATGCTAAGTTTTGTTAAGCCAGATCTGCCTTGAACTTTGGCGATTGGTTAATCTTTTTCTCCCTTTGTTAAATGATTAGTATTAAAATAAATAAATTTTTGTTAAAATCTTATGTTGTAACTAGTTGTTAGTGCCATCTGTATTTATAACTAAAATATAATTACATGTTCAAAATTGTGATATGTTGAAAGTTAACGATATTTTTCTGTGCAATAAAGAAAAGTGGTGATATTTTAGAATGCCGTGGG

Coding sequences of Glyma15g08300

Limit To All Plant Sequences

>Glyma15g08300.1   sequence type=CDS   gene model=Glyma15g08300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTGCTAGAGAAGCTCTGGGATGATGTTGTGGCTGGCCCTCAACCTGAGCGTGGCCTTGGCAAGCTCAGAAAACTCACCACCCTCAAAACTATTGATGAAGGAGAAAGTAGCAAGCTGCAGAAGACGTTGTCGATGCCGTCGACACCAACAACCCCGATGACTCCGACGACTCCAACGACACCGGGATCGGCCCGTAAAGCTGACAACGTTTGGAGGAGCGTCTTCCATCCTGGGAGCAACTCCGCCACAAAGACCATCGGTGCTCAGATGTTTGACAAACCACTTCCCAACACTCCCACTGTCTATGACTGGTATATTATTGTTTGTTGCTACGTTCTTTTCCCCATGTATAACTAA

>Glyma15g08300.2   sequence type=CDS   gene model=Glyma15g08300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTGCTAGAGAAGCTCTGGGATGATGTTGTGGCTGGCCCTCAACCTGAGCGTGGCCTTGGCAAGCTCAGAAAACTCACCACCCTCAAAACTATTGATGAAGGAGAAAGTAGCAAGCTGCAGAAGACGTTGTCGATGCCGTCGACACCAACAACCCCGATGACTCCGACGACTCCAACGACACCGGGATCGGCCCGTAAAGCTGACAACGTTTGGAGGAGCGTCTTCCATCCTGGGAGCAACTCCGCCACAAAGACCATCGGTGCTCAGATGTTTGACAAACCACTTCCCAACACTCCCACTGTCTATGACTGGCTGTACAGTGGGGAGACCAGAAGCAGGCACCGCTGA

Predicted protein sequences of Glyma15g08300

Limit To All Plant Sequences

>Glyma15g08300.1   sequence type=predicted peptide   gene model=Glyma15g08300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLLEKLWDDVVAGPQPERGLGKLRKLTTLKTIDEGESSKLQKTLSMPSTPTTPMTPTTPTTPGSARKADNVWRSVFHPGSNSATKTIGAQMFDKPLPNTPTVYDWYIIVCCYVLFPMYN*

>Glyma15g08300.2   sequence type=predicted peptide   gene model=Glyma15g08300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLLEKLWDDVVAGPQPERGLGKLRKLTTLKTIDEGESSKLQKTLSMPSTPTTPMTPTTPTTPGSARKADNVWRSVFHPGSNSATKTIGAQMFDKPLPNTPTVYDWLYSGETRSRHR*

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