SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G28320 | AT | Annotation by Michelle Graham. TAIR10: protease-related | chr1:9920673-9924347 REVERSE LENGTH=709 | SoyBase | E_val: 9.00E-95 | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004175 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity | SoyBase | N/A | ISS |
| PTHR21004 | Panther | SERINE PROTEASE-RELATED | JGI | ISS | |
| UniRef100_B9RBB4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Trypsin domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RBB4_RICCO | SoyBase | E_val: 6.00E-96 | ISS |
| UniRef100_UPI000233B36D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B36D related cluster n=1 Tax=unknown RepID=UPI000233B36D | SoyBase | E_val: 0 | ISS |
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Glyma15g08281 not represented in the dataset |
Glyma15g08281 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g31076 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g076300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g08281.2 sequence type=transcript gene model=Glyma15g08281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATTACTTGTAGCCGGAACTTCAAAATGAAGGTCATCATCATCAATTCATCATACTCACTGTCCCAAATTCCTCTTAGGTCCCAACCCAGTAACTATGATTCCATCGGAAACCGTTAATTTTGCTCGAAATTTCGCAGCTATGGTCAGAGTTCGTGGCCCTTTCTGGTGGAACAACTCTTTCAGCTTCTGGGATGCTCGTACCTGATACCCTTTGTGATGCTCAAGTAGCTGGGTGTCTCTATGGTGATAACTGTGAGGATAGGGTGTTGGTTGTGACGGTTGCTTCAGTTGTTGAGCCTTTTCTGTCACCTCAACAGAGAGACAATATTCCTCAGGGTAGGCCAGACTTGATTTCTGGTGTTCGGATTGATGTTATGACAGAGGAAGCCAATGAAAAATCCAATCAGGGAACTCCTTGTTGGCTTGCGGCAGAGCTTTTGTCATTAGTTGATATTCCTGCTTCATCCAATTGTCTCCAGTCACTTATTGAAGCATCTTTGGGTTTGCCAGAGCATGAATGGGAGGTTGGTTGGTCTTTGGCATCTTACAATAATGATTCTCAACCTTCCAAAGATTTTTTTCAAACTCATCCTTGGGAAAGATTGGGCGTGGGAGTATCTGGCAGTGCAAGTCTTATGTACAAATCACTTACTCGAATGGCAATTTTCAGTGTTTCTTTATCTTTCAGGGACTTGCTGGATAGTAAAGTATCTGCCATGAATAAAAAGGGTGATTTTCTTCTGGCAGTTGGATCTCCTTTTGGAGTCCTGTCACCTATGCACTTTTTTAACAGCATCTCTGTAGGATGCATTGCAAACTGCTATCCTCCTCATTCATCTGATGGATCGTTGCTGATGGCTGACATACGCTGTCTTCCTGGAATGGAAGGCAGTCCAGTTTTCAGTGAGCATGCATGTCTTATTGGTGTCCTGATTAGACCATTGAGACAGAAGACGTATGGAGAGGAAATCCAGCTGGTGATTCCTTGGGATGCCATTGTGACTGCTTCTAGTAGCTTGCTGCGAAAGAGGCCTCAGAACACACAGAAAGGGTTATGTAATCAGGGGAAACTTTTATGCTGCAGGAAGGGATTCTTCCCATCTGTTTGCTCTGGTGTGGTAGCAAAAGTGGTTGAGGCAAAGACTCCTCAATCTTATCTGTCCATTCAACCTGAGCATCTGCACAACCATGAGCACTTCCCAGCAATGCTCGAAACAACAGCTACTATTCATCCTGGTGCTAGTGGTGGTGCTGTTATCAATTCAGATGGTCACATGATTGGCCTGGTTACAAGCAATGCAAGGCATAGTGGAGGAGCAGTAATACCTCATCTTAATTTTAGCATTCCATCTGCTGCTTTGGCACCCGTCTTCAAATTCTCAAAAGCCATGCAGGATTTATCACTTCTACGGATTCTAGATGAACCGAACGAATACCTTTCATCTGTATGGGCATTGATGCGGCCATCATATCCTAATCCTCATCCTATGCATGATCCACCTCAGTCTGTTACAGACAATAAAAATAAAGAGAAGGGTTCTCGGTTTGCTAAAGTTTATTGCTGAAAGAAAGGACATTTTCAATTCTGGAAAAAGTGGAGTGATTTCTAAGGAAGTTATTCCTAGTAAGTTATGATCTCTGATGAAGTGACAAAGTTTACCTGAATGACCATGGCAAAGCTTTGCCAGCATACAACTTGTCAATGTGTACACTTCCTATGATTAAAATCTTTGAACTGAAATCTTCTGCCTTGGATTGTTAGCCAAAGAAAAATCAAGGAAATAAATTTTCTAGAACCTCTAAACGATTATACTTGTACTTTATTAAAGTTTAAAACTGATTTTACATAAGACAGTTATTTTTGTCTTATAGGAGAAACTCTTGATGGAGTTATTTTGTTCAATAACCCAAGCATTAAATATTTTGATATCATCTCAACGATGATGCACATCAAGTTTCAGATAAACTAAAAAAAATAATTAGGTAATTTAATAGTCGACATTTACTTAT
>Glyma15g08281.1 sequence type=CDS gene model=Glyma15g08281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTCCATCGGAAACCGTTAATTTTGCTCGAAATTTCGCAGCTATGGTCAGAGTTCGTGGCCCTGTGAGTTTCTCTTTCTCTCTTCTACAACGCCGCCTACTCTATTATCACCGCTCACTCAGCTTGCAATTAACTTTTCGGGACCCAAAAGGGTTAAAGATGAGAAAACACGCTTTTCATCAATACTGTTCTGGTGGAACAACTCTTTCAGCTTCTGGGATGCTCGTACCTGATACCCTTTGTGATGCTCAAGTAGCTGGGTGTCTCTATGGTGATAACTGTGAGGATAGGGTGTTGGTTGTGACGGTTGCTTCAGTTGTTGAGCCTTTTCTGTCACCTCAACAGAGAGACAATATTCCTCAGGGTAGGCCAGACTTGATTTCTGGTGTTCGGATTGATGTTATGACAGAGGAAGCCAATGAAAAATCCAATCAGGGAACTCCTTGTTGGCTTGCGGCAGAGCTTTTGTCATTAGTTGATATTCCTGCTTCATCCAATTGTCTCCAGTCACTTATTGAAGCATCTTTGGGTTTGCCAGAGCATGAATGGGAGGTTGGTTGGTCTTTGGCATCTTACAATAATGATTCTCAACCTTCCAAAGATTTTTTTCAAACTCATCCTTGGGAAAGATTGGGCGTGGGAGTATCTGGCAGTGCAAGTCTTATGTACAAATCACTTACTCGAATGGCAATTTTCAGTGTTTCTTTATCTTTCAGGGACTTGCTGGATAGTAAAGTATCTGCCATGAATAAAAAGGGTGATTTTCTTCTGGCAGTTGGATCTCCTTTTGGAGTCCTGTCACCTATGCACTTTTTTAACAGCATCTCTGTAGGATGCATTGCAAACTGCTATCCTCCTCATTCATCTGATGGATCGTTGCTGATGGCTGACATACGCTGTCTTCCTGGAATGGAAGGCAGTCCAGTTTTCAGTGAGCATGCATGTCTTATTGGTGTCCTGATTAGACCATTGAGACAGAAGACGTATGGAGAGGAAATCCAGCTGGTGATTCCTTGGGATGCCATTGTGACTGCTTCTAGTAGCTTGCTGCGAAAGAGGCCTCAGAACACACAGAAAGGGTTATGTAATCAGGGGAAACTTTTATGCTGCAGGAAGGGATTCTTCCCATCTGTTTGCTCTGGTGTGGTAGCAAAAGTGGTTGAGGCAAAGACTCCTCAATCTTATCTGTCCATTCAACCTGAGCATCTGCACAACCATGAGCACTTCCCAGCAATGCTCGAAACAACAGCTACTATTCATCCTGGTGCTAGTGGTGGTGCTGTTATCAATTCAGATGGTCACATGATTGGCCTGGTTACAAGCAATGCAAGGCATAGTGGAGGAGCAGTAATACCTCATCTTAATTTTAGCATTCCATCTGCTGCTTTGGCACCCGTCTTCAAATTCTCAAAAGCCATGCAGGATTTATCACTTCTACGGATTCTAGATGAACCGAACGAATACCTTTCATCTGTATGGGCATTGATGCGGCCATCATATCCTAATCCTCATCCTATGCATGATCCACCTCAGTCTGTTACAGACAATAAAAATAAAGAGAAGGGTTCTCGGTTTGCTAAAGTTTATTGCTGA >Glyma15g08281.2 sequence type=CDS gene model=Glyma15g08281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCGTACCTGATACCCTTTGTGATGCTCAAGTAGCTGGGTGTCTCTATGGTGATAACTGTGAGGATAGGGTGTTGGTTGTGACGGTTGCTTCAGTTGTTGAGCCTTTTCTGTCACCTCAACAGAGAGACAATATTCCTCAGGGTAGGCCAGACTTGATTTCTGGTGTTCGGATTGATGTTATGACAGAGGAAGCCAATGAAAAATCCAATCAGGGAACTCCTTGTTGGCTTGCGGCAGAGCTTTTGTCATTAGTTGATATTCCTGCTTCATCCAATTGTCTCCAGTCACTTATTGAAGCATCTTTGGGTTTGCCAGAGCATGAATGGGAGGTTGGTTGGTCTTTGGCATCTTACAATAATGATTCTCAACCTTCCAAAGATTTTTTTCAAACTCATCCTTGGGAAAGATTGGGCGTGGGAGTATCTGGCAGTGCAAGTCTTATGTACAAATCACTTACTCGAATGGCAATTTTCAGTGTTTCTTTATCTTTCAGGGACTTGCTGGATAGTAAAGTATCTGCCATGAATAAAAAGGGTGATTTTCTTCTGGCAGTTGGATCTCCTTTTGGAGTCCTGTCACCTATGCACTTTTTTAACAGCATCTCTGTAGGATGCATTGCAAACTGCTATCCTCCTCATTCATCTGATGGATCGTTGCTGATGGCTGACATACGCTGTCTTCCTGGAATGGAAGGCAGTCCAGTTTTCAGTGAGCATGCATGTCTTATTGGTGTCCTGATTAGACCATTGAGACAGAAGACGTATGGAGAGGAAATCCAGCTGGTGATTCCTTGGGATGCCATTGTGACTGCTTCTAGTAGCTTGCTGCGAAAGAGGCCTCAGAACACACAGAAAGGGTTATGTAATCAGGGGAAACTTTTATGCTGCAGGAAGGGATTCTTCCCATCTGTTTGCTCTGGTGTGGTAGCAAAAGTGGTTGAGGCAAAGACTCCTCAATCTTATCTGTCCATTCAACCTGAGCATCTGCACAACCATGAGCACTTCCCAGCAATGCTCGAAACAACAGCTACTATTCATCCTGGTGCTAGTGGTGGTGCTGTTATCAATTCAGATGGTCACATGATTGGCCTGGTTACAAGCAATGCAAGGCATAGTGGAGGAGCAGTAATACCTCATCTTAATTTTAGCATTCCATCTGCTGCTTTGGCACCCGTCTTCAAATTCTCAAAAGCCATGCAGGATTTATCACTTCTACGGATTCTAGATGAACCGAACGAATACCTTTCATCTGTATGGGCATTGATGCGGCCATCATATCCTAATCCTCATCCTATGCATGATCCACCTCAGTCTGTTACAGACAATAAAAATAAAGAGAAGGGTTCTCGGTTTGCTAAAGTTTATTGCTGA
>Glyma15g08281.1 sequence type=predicted peptide gene model=Glyma15g08281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIPSETVNFARNFAAMVRVRGPVSFSFSLLQRRLLYYHRSLSLQLTFRDPKGLKMRKHAFHQYCSGGTTLSASGMLVPDTLCDAQVAGCLYGDNCEDRVLVVTVASVVEPFLSPQQRDNIPQGRPDLISGVRIDVMTEEANEKSNQGTPCWLAAELLSLVDIPASSNCLQSLIEASLGLPEHEWEVGWSLASYNNDSQPSKDFFQTHPWERLGVGVSGSASLMYKSLTRMAIFSVSLSFRDLLDSKVSAMNKKGDFLLAVGSPFGVLSPMHFFNSISVGCIANCYPPHSSDGSLLMADIRCLPGMEGSPVFSEHACLIGVLIRPLRQKTYGEEIQLVIPWDAIVTASSSLLRKRPQNTQKGLCNQGKLLCCRKGFFPSVCSGVVAKVVEAKTPQSYLSIQPEHLHNHEHFPAMLETTATIHPGASGGAVINSDGHMIGLVTSNARHSGGAVIPHLNFSIPSAALAPVFKFSKAMQDLSLLRILDEPNEYLSSVWALMRPSYPNPHPMHDPPQSVTDNKNKEKGSRFAKVYC* >Glyma15g08281.2 sequence type=predicted peptide gene model=Glyma15g08281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLVPDTLCDAQVAGCLYGDNCEDRVLVVTVASVVEPFLSPQQRDNIPQGRPDLISGVRIDVMTEEANEKSNQGTPCWLAAELLSLVDIPASSNCLQSLIEASLGLPEHEWEVGWSLASYNNDSQPSKDFFQTHPWERLGVGVSGSASLMYKSLTRMAIFSVSLSFRDLLDSKVSAMNKKGDFLLAVGSPFGVLSPMHFFNSISVGCIANCYPPHSSDGSLLMADIRCLPGMEGSPVFSEHACLIGVLIRPLRQKTYGEEIQLVIPWDAIVTASSSLLRKRPQNTQKGLCNQGKLLCCRKGFFPSVCSGVVAKVVEAKTPQSYLSIQPEHLHNHEHFPAMLETTATIHPGASGGAVINSDGHMIGLVTSNARHSGGAVIPHLNFSIPSAALAPVFKFSKAMQDLSLLRILDEPNEYLSSVWALMRPSYPNPHPMHDPPQSVTDNKNKEKGSRFAKVYC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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