Glyma15g08221 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g08221

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5793186
stop:	5795995
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08221

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21020	AT	Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant protein (LEA) family protein \| chr4:11228263-11229392 FORWARD LENGTH=266	SoyBase	E_val: 2.00E-11	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
UniRef100_I1MEK6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MEK6_SOYBN	SoyBase	E_val: 1.00E-86	ISS
UniRef100_Q9SPJ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Maturation protein pPM32 n=1 Tax=Glycine max RepID=Q9SPJ6_SOYBN	SoyBase	E_val: 5.00E-64	ISS

Expression Patterns of Glyma15g08221

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g08221 not represented in the dataset	Glyma15g08221 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08221

Paralog	Evidence	Comments
Glyma13g31120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08221 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g075700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08221

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g08221

Limit To All Plant Sequences

>Glyma15g08221.1   sequence type=CDS   gene model=Glyma15g08221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCACCTTCGCCTCCATTTCCAACAAAGACTGGAGAAGTGCAGAAGAAGAAGAAGGAAGAAGAGACGGAAGAACCGATTGGATATATGATTCTGCGGAGGCAGATGAAATGACAGAGAGGGCAAAAGAAACGATGATTGAAGGCTATGACAGGGCCAAGGATCAAGAGCGAGAAGCCAAAGACAGAACCAAGGAATACACACACGACGCAAAGGATAAGACCGAAGAGTATGCTTATGACACAAAAGAGAGTGACAAGGACGATGCAGGAAAGGTGGTGGACAGGAGTAGGGAAGGGGCGGAGAGGACGAAGGAGAAGACGGAGGAGGTGGCGGTCTCGGCGGGGGAGACGCTGAGGAACGTGGGGGAGAAGGCGAAGCAGGGCATGCAAGGGGCGTGGGAGACGGCGAAGGACACCACGCAGAAGATCAAGGAGACGGTGGTTGGTAAGGATGATGATGATGATGGTCGTGGTGTTCTCAAGGATGAGGATGTTGTGGAGATGAAGAGAAGAGTTGAAATGCAGTTGAAGGAAATGTCTGAGAGGGCCAAAATAACGATGAGCGAAAGCATGGACAGGGCCAAAGGGCAAGCACAAGAAGTGAAAGAAAGCATAAAGATGATGTTGTGGAGTTGA

Predicted protein sequences of Glyma15g08221

Limit To All Plant Sequences

>Glyma15g08221.1   sequence type=predicted peptide   gene model=Glyma15g08221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VTFASISNKDWRSAEEEEGRRDGRTDWIYDSAEADEMTERAKETMIEGYDRAKDQEREAKDRTKEYTHDAKDKTEEYAYDTKESDKDDAGKVVDRSREGAERTKEKTEEVAVSAGETLRNVGEKAKQGMQGAWETAKDTTQKIKETVVGKDDDDDGRGVLKDEDVVEMKRRVEMQLKEMSERAKITMSESMDRAKGQAQEVKESIKMMLWS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain