Glyma15g08210 - SoyBase

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Report for Sequence Feature Glyma15g08210

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5789043
stop:	5791520
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10360	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S6e \| chr5:3258734-3260142 REVERSE LENGTH=249	SoyBase	E_val: 8.00E-163	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0040007	GO-bp	Annotation by Michelle Graham. GO Biological Process: growth	SoyBase	N/A	ISS
GO:0042274	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosomal small subunit biogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1646	KOG	40S ribosomal protein S6	JGI		ISS
PTHR11502	Panther	40S RIBOSOMAL PROTEIN S6	JGI		ISS
PF01092	PFAM	Ribosomal protein S6e	JGI		ISS
UniRef100_I1MEK5	UniRef	Annotation by Michelle Graham. Best UniRef hit: 40S ribosomal protein S6 n=1 Tax=Glycine max RepID=I1MEK5_SOYBN	SoyBase	E_val: 1.00E-178	ISS
UniRef100_I1MEK5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S6 n=1 Tax=Glycine max RepID=I1MEK5_SOYBN	SoyBase	E_val: 1.00E-178	ISS

Expression Patterns of Glyma15g08210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g08210 not represented in the dataset	Glyma15g08210 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08210

Paralog	Evidence	Comments
Glyma13g31130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g075600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g08210

Limit To All Plant Sequences

>Glyma15g08210.2   sequence type=transcript   gene model=Glyma15g08210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTCACTCAGCCGCTGCGAGGCGAACAGAGAGACCCGAAGCCAGATTTCAAGATGAAGTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGATGATGACCTGAAGCTACGAGCATTTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTTGGTGATTGTGAAGAAGGGTGAAAGTGATTTACCTGGCCTGACAGATGTTGAAAAGCCAAGGATGAGGGGTCCAAAGAGAGCTTCCAAGATTCGCAAGCTGTTCAATCTGTCTAAGGAGGATGATGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGGTAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGACCCTCCAAAGAAAGAGGGCAAGGATTGCAGATAAGAAGAAGAGAATTGCCAAAGCAAAATCAGAGGCAGCAGAGTACCAGAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGAGATCGCCGGAGTGAGAGCTTGGCTAAGAGAAGATCAAAGCTTTCCAGTGCAGCTAAACAAGCTGCCACAGCATAAGATGCTTTCAGACAGAGAAGTTTAGTCTTCGCCCTAGTTTTTGATAGTCCCATTTCATGATCCCTTTCTTTTGGTATTTTGGTATTCAAATACTTTTTTAAAGTATTTCTTTTATGCTTTCTTCGACAGTTTAATTGAATTTAAGTTTTTTTTTCCTTGTTGGAATTAGTGTGACCTTTTGAAGATGATATTTATAGACTGGCATATTTCTTTCTACCCTG

Coding sequences of Glyma15g08210

Limit To All Plant Sequences

>Glyma15g08210.1   sequence type=CDS   gene model=Glyma15g08210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGATGATGACCTGAAGCTACGAGCATTTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTTGGTGATTGTGAAGAAGGGTGAAAGTGATTTACCTGGCCTGACAGATGTTGAAAAGCCAAGGATGAGGGGTCCAAAGAGAGCTTCCAAGATTCGCAAGCTGTTCAATCTGTCTAAGGAGGATGATGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGGGAAAAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGACCCTCCAAAGAAAGAGGGCAAGGATTGCAGATAAGAAGAAGAGAATTGCCAAAGCAAAATCAGAGGCAGCAGAGTACCAGAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGAGATCGCCGGAGTGAGAGCTTGGCTAAGAGAAGATCAAAGCTTTCCAGTGCAGCTAAACAAGCTGCCACAGCATAA

>Glyma15g08210.2   sequence type=CDS   gene model=Glyma15g08210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGATGATGACCTGAAGCTACGAGCATTTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGGAATTCAAAGGCTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTTGGTGATTGTGAAGAAGGGTGAAAGTGATTTACCTGGCCTGACAGATGTTGAAAAGCCAAGGATGAGGGGTCCAAAGAGAGCTTCCAAGATTCGCAAGCTGTTCAATCTGTCTAAGGAGGATGATGTGAGGAAGTATGTCAACACATATAGGAGAACATTTACAACTAAAAATGGTAAGGTGAGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGACCCTCCAAAGAAAGAGGGCAAGGATTGCAGATAAGAAGAAGAGAATTGCCAAAGCAAAATCAGAGGCAGCAGAGTACCAGAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGAGATCGCCGGAGTGAGAGCTTGGCTAAGAGAAGATCAAAGCTTTCCAGTGCAGCTAAACAAGCTGCCACAGCATAA

Predicted protein sequences of Glyma15g08210

Limit To All Plant Sequences

>Glyma15g08210.1   sequence type=predicted peptide   gene model=Glyma15g08210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVVGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSKLSSAAKQAATA*

>Glyma15g08210.2   sequence type=predicted peptide   gene model=Glyma15g08210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVVGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSKLSSAAKQAATA*

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