Glyma15g08180 - SoyBase

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Report for Sequence Feature Glyma15g08180

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5764812
stop:	5771194
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28260	AT	Annotation by Michelle Graham. TAIR10: Telomerase activating protein Est1 \| chr1:9875776-9878782 REVERSE LENGTH=880	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG2162	KOG	Nonsense-mediated mRNA decay protein	JGI		ISS
PTHR15696	Panther	SMG-7 (SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7)	JGI		ISS
PF10374	PFAM	Telomerase activating protein Est1	JGI		ISS
UniRef100_G7ISB5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Telomerase-binding protein EST1A n=1 Tax=Medicago truncatula RepID=G7ISB5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B8DF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B8DF related cluster n=1 Tax=unknown RepID=UPI000233B8DF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g08180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08180

Paralog	Evidence	Comments
Glyma13g31150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g075400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g08180

Limit To All Plant Sequences

>Glyma15g08180.2   sequence type=CDS   gene model=Glyma15g08180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTAATCCATCGCTTTTGCCAGGAATTCATAAAGAAGAAAAAGTTCTCTCGGAGATTGGGAATTCTGAAAAGCAGTTGTGGGCATTGATCCATTCCAAAGGCCTTCTGCACTCTGATGCTCAAGACTTGTACCACAAGGTCCGGTCTAGTTATGAGAGAATAATCTTGAGTAACCACATGCTCTCAGAACTTCAGGATGTTGAATATTCCTTGTGGAAGCTGCACTATAAGCATATTGATGAATTTCGCAAAATAATAAAGAAAAGCTCTGGTAATGTGGAGAGCAAAAAATCAGGAATGCCACAAAATCGTGCTGTGCAGGGAGACAATTGCAATCATTTAAAGTTATTCAAGATATTTCTGACAGAAGCTATTGAGTTTTACCAAACTCTGATTGTAAAACTTAGAAAACATTATGGAGTCCCAGTGGAGGCTTTGTTTTATAAAATGGGTTGGAACTCTACTTCTGTTGAACCAGATGTCATGCAGAAATGCCAGTATTTATGTCATCGCTGCTTAGTTTGTATGGGGGATCTTGCCAGGTATAAACAACAATGTGAAAACCCAGATACTAAAAATCATAATTGGTCGGTTGCTGCCACCCATTATTTGGAAGCAACAAGGATTTGGCCAGACAGTGGTAACCCACAAAATCAGTTGGCTGTACTGGCAACATATATTGGTGATGAATTTCTTGCTCTTTACCATTGTGTAAGAAGTTTAGCGGTTAAAGAACCTTTTCCTGATGCCTGGAACAATCTTATCTTGTTGTTTGAGAAGAACAGGTCATCTCCTCTGGAATATGTTTCCAGCAAAATCTGTTTAGATTTCTTGAAACCTTTTCGAAGAATTGGTGAAGAGACCAAGGCACAATGGGAAGATGATAGCTCAAACTGCAACAAGTTTGAAGGCAAAAGTAATCATTTTGCAAAGTTATGGTCTCTTGTGGTCAGAACAATAAGCTTCCTCTTCATATCGTCAAGTTTAGAGGAATTCTCTATTGCATTGGCATCTACAATTGGAGAGTTGGATAAAACGATGGAGCTAGAAGATGCAGAACTAAAGACCATGTTGGAATCCTATAGTCAAATGGATTTAGCCAGAAGAGGTCCTTTCCGAGCTATACAAGTAGTTTCTGTTCTCATATTTTCCCTAACGAATCTGATTGATAGACTTAGAAAAGATGAATCAGAAAACAAAAATGATGGACAGTTAATGCAGCTGGCATTAACTGCTGCATTCAGCTTGATGGGACGTTTCATTGAAAGATGCCTAAAGGCTAGTTCTTTGATACATTGCCCCTTGTTGCCCTCAGTGCTTGTTTTTGTGGAGTGGTGTTCAAGCATACATGAAGTATGTGCAACCGATCAAAAGAGTACAATAGCTATTTCTTATTTTTTTGATGTGTTTGTTGCACTTCTAAATCAACTAAAGGATGATAAAAAGGAAACCGAGAAGCATCTTCATAGAACTCCTCTTTGGGAGGATTATGAGTTGAGGGGCTTTGTACCTATAGCTTGTTCACATCTCTCATTGGATTTTTGCGGTAATTGGGAACACATAGACAACTTTGAAAGTGGAATTGAATTGCGTACTGAGCGCATCAGAGAAGTAGCAATGAAGATAGCAAGCAGTTCAAATAATTGGCAGAAGTGGATTACATGTGATAAATTAGGAAGTAATTTTTATGTGGCTAGATCAGATCAAGATCTTGACAAGAAAGAAACAGAAACTGTGCAGTCCAACGGCAATAGTACAAAATTGGAAGAGCCTAATCAGAAAACGAACAAAGACACAGGAGAACATGGTAAAGGGATGATAAAGGATAATCTAAGTACCAATGGAAAATCTTCTGTAGTGGAAGAAGAGGAAGTTATTCTCTTCAGACCTCTCACAAGGTATAATTCAGCACCATCACACCCCTCTATCTCAACTGATGACAAGATGTCACCAAAAGACAAGGACAGCCAAAGCTTACTGTCCGATGATTGTTTGCGCCGTGCTAGTTCTCTATTTATGGCACAAAATCCAGCTCAAACTCAAAGTGATCCATGGGAATTCAGCATTTTGGATGTCAGGAGTGACAAATCATTCAAACAACAAGAACCTTCAACAAGAGAATCAAATGCGCATAGTTTCTCAGAAGCCCCAATCTCTGCTGGCCCTCCTTCTCTCAATGCTTGGGTCCTTGATAGAGGAAGCTTTAGCCCCAACAGAAACAATGGGACAAATGGCCTTAGTGAGCACAGGTTGCAGCCCATTGAGGAAATAGCCTCTTCATCTTTGGCCAGTCTTTCCATCAATAAAGCTGAGAATTCAGCCACAAGTTCAGTGGATGAGTCTTCAAACTCCCATTACTCCTCTTCTGCTACATATTCCCTTCCAATACCTTCTGCTCCATTACTACCTTATAATGCTGCATGGTTTAGTGTTGCACAATCTAGTTTATCTTCTCCATTATTTACTGACAACTCATTACCAAAAAGTGGTTATCCAGATTGGAGTTCTACTTATGGACCACATGGATATGATCCTAGATTTCCTGTTCTATCAAGTGGATATCCACCACCTGGCAGAATGACTTCTTCAGAATGGCTTCGTTGGTACAGAGAAAATTACAAACCTGAAAGGACTAACAATAACATGCAACCCACTCATTTGAATACTCCTGGTCCTGGAAATCATGTCAACTTCCTCTACCATGATACTTACAGGTTTGGTCAATTTGATACATGGAACAACAACCCCCCTTTGTCTTCTAACCAGTACACTTACATGGAGCCCCCAGGGCCTCCACCAGTGCAGCCAGGTTTTTTGTCTGCTTTTGGTGAGCACAAAGGCAGTGTCTACAACAATTTTCAAAGACCAAGCCCTTATGGGTGTGGTGTAGTGACAGACCTGAGAAATGAGCCACAGTCTCTACTAGAGTGCCTGAAGGAGAAAGAGTGGAGACTCCAGTCAGATCCTAATGTCAGAGGGCCTACATTCATGGGAAATTAG

Predicted protein sequences of Glyma15g08180

Limit To All Plant Sequences

>Glyma15g08180.2   sequence type=predicted peptide   gene model=Glyma15g08180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNPSLLPGIHKEEKVLSEIGNSEKQLWALIHSKGLLHSDAQDLYHKVRSSYERIILSNHMLSELQDVEYSLWKLHYKHIDEFRKIIKKSSGNVESKKSGMPQNRAVQGDNCNHLKLFKIFLTEAIEFYQTLIVKLRKHYGVPVEALFYKMGWNSTSVEPDVMQKCQYLCHRCLVCMGDLARYKQQCENPDTKNHNWSVAATHYLEATRIWPDSGNPQNQLAVLATYIGDEFLALYHCVRSLAVKEPFPDAWNNLILLFEKNRSSPLEYVSSKICLDFLKPFRRIGEETKAQWEDDSSNCNKFEGKSNHFAKLWSLVVRTISFLFISSSLEEFSIALASTIGELDKTMELEDAELKTMLESYSQMDLARRGPFRAIQVVSVLIFSLTNLIDRLRKDESENKNDGQLMQLALTAAFSLMGRFIERCLKASSLIHCPLLPSVLVFVEWCSSIHEVCATDQKSTIAISYFFDVFVALLNQLKDDKKETEKHLHRTPLWEDYELRGFVPIACSHLSLDFCGNWEHIDNFESGIELRTERIREVAMKIASSSNNWQKWITCDKLGSNFYVARSDQDLDKKETETVQSNGNSTKLEEPNQKTNKDTGEHGKGMIKDNLSTNGKSSVVEEEEVILFRPLTRYNSAPSHPSISTDDKMSPKDKDSQSLLSDDCLRRASSLFMAQNPAQTQSDPWEFSILDVRSDKSFKQQEPSTRESNAHSFSEAPISAGPPSLNAWVLDRGSFSPNRNNGTNGLSEHRLQPIEEIASSSLASLSINKAENSATSSVDESSNSHYSSSATYSLPIPSAPLLPYNAAWFSVAQSSLSSPLFTDNSLPKSGYPDWSSTYGPHGYDPRFPVLSSGYPPPGRMTSSEWLRWYRENYKPERTNNNMQPTHLNTPGPGNHVNFLYHDTYRFGQFDTWNNNPPLSSNQYTYMEPPGPPPVQPGFLSAFGEHKGSVYNNFQRPSPYGCGVVTDLRNEPQSLLECLKEKEWRLQSDPNVRGPTFMGN*

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