Glyma15g08160 - SoyBase

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Report for Sequence Feature Glyma15g08160

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5751120
stop:	5752847
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28280	AT	Annotation by Michelle Graham. TAIR10: VQ motif-containing protein \| chr1:9886297-9887395 REVERSE LENGTH=243	SoyBase	E_val: 6.00E-61	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_I1MEK1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEK1_SOYBN	SoyBase	E_val: 2.00E-137	ISS
UniRef100_Q9FZA1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F3H9.7 protein n=3 Tax=Arabidopsis thaliana RepID=Q9FZA1_ARATH	SoyBase	E_val: 5.00E-57	ISS

Expression Patterns of Glyma15g08160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08160

Paralog	Evidence	Comments
Glyma13g31180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g075200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g08160

Limit To All Plant Sequences

>Glyma15g08160.1   sequence type=CDS   gene model=Glyma15g08160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTCCATTTCCCCAAGAGCTCAAGAGAATAATAACACTACGGCGAAGGCCATGATGACGAGATCCGAACCAGCGAACCCATACCCGACAACGTTCGTCCAAGCTGACACATCCTCCTTCAAGCAAGTAGTCCAAATGCTAACCGGCTCCTCGGAGACAGCGAAACAAGCAGCCGCCGGCGGCTCCTCGAAACCTTCGAACTCGATCCCACCCATGAAATCCATACCCAACAAAAAGCATTTTTCTAAGCTCTACGAGCGCAGAGCAAACTCCCTGAACCTCAAGAACATCAACCCCCTCACCTCGTTTTTCTCGAACCACAACACTAATTCCCCCCGAAAACCCGACATCCTCTCCCCCAGCATCCTCGACTTCCCCGCACTCGTTCTCAGCCCCGTCACGCCTCTCATTCCCGACCCTTTCGACCGATCCAACGCCGCCATCGATTCCGAAGCTGAAGACAAAGCCATCAAAGAGAAAGGTTTCTTCTTTCACCCTTCTCCCAGAGACAAATCTCAACCCCGCTTGCTCCCTCTCTTCCCCACAACTTCTCCCAGAGCCTCCTCCAATGCTCCTTCTTCCGCTCCTCCTTCTTAA

Predicted protein sequences of Glyma15g08160

Limit To All Plant Sequences

>Glyma15g08160.1   sequence type=predicted peptide   gene model=Glyma15g08160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSISPRAQENNNTTAKAMMTRSEPANPYPTTFVQADTSSFKQVVQMLTGSSETAKQAAAGGSSKPSNSIPPMKSIPNKKHFSKLYERRANSLNLKNINPLTSFFSNHNTNSPRKPDILSPSILDFPALVLSPVTPLIPDPFDRSNAAIDSEAEDKAIKEKGFFFHPSPRDKSQPRLLPLFPTTSPRASSNAPSSAPPS*

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