Glyma15g08150 - SoyBase

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Report for Sequence Feature Glyma15g08150

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5742181
stop:	5745506
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20980	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) \| chr4:11216997-11218772 FORWARD LENGTH=591	SoyBase	E_val: 0	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
KOG2479	KOG	Translation initiation factor 3, subunit d (eIF-3d)	JGI		ISS
PTHR12399	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7	JGI		ISS
PF05091	PFAM	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)	JGI		ISS
UniRef100_B9RBD0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9RBD0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MEK0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEK0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g08150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08150

Paralog	Evidence	Comments
Glyma13g31200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g075100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g08150

Limit To All Plant Sequences

>Glyma15g08150.1   sequence type=CDS   gene model=Glyma15g08150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAAAGCCTTCGACATCGGAGCCGTTCCGTTCAACGCCGACGGGTGGGGTCCGCCGGACAACGCGACCTCAGGCAGCAACAACAACAACCTCCCTCTGAACGTCCCCTTCGCCCCCTTCTCCCGCTCCGACAAATTGGGCCGCATCGCCGACTGGACCCGCAACTTCAACAATCCGACCCGCTCCAAGAACCCCGCCGATGCCGTCTTCGACTTCGCCAACGACGACTCCTTCCCCGCCTCCGCCGACGACGACGCCTCCTTCCGCCTCGTCGACGGAAAGCCCCCGCCGCGCCCCAAATTCGGCCCCAAGTGGCGCTTCCAGCAGCAGCGCCAGCTCCCTCAGCGGCGCGACGAGGAAGTCGAGGCCAAGAAGCGCGAGCAGGAGAAGGAACGAGCCCGCAGAGACCGTCTCTACCACATGAACCGCTCAAACCCTAACCAACAGCGCCGCGAAGCCGCCGTCTTCAAATCCTCCGTGGATATCCAACCCGAGTGGAACATGCACGACCAGATCCCCTTCAGCACCTTCTCCAAGCTCTCCTTCACCGTTCCCGAACCCGAAGACCTCCTCCTCTGCGGCGCCCTCGAGTATTACGACCGCACCTACGATCGGATCACTCCCAAAAACGAACGCCGCCTCGAACGCTTCAAGAATCGGAACTTCTTCAAAGTCACCACCACCGACGACCCCGTCATTCGCAGACTCGCCAACGAGGACAAAGCCACCGTTTTCGCCACCGACACGATTCTCTCCACTCTCATGTGTGCTCCCAGGTCTGTTTATTCCTGGGACATTGTCGTTCAGCGTGTGGGGAATAAGCTCTTCTTCGATAAGCGCGATGGGTCGCAGCTTGATTTGCTCTCTGTTCACGAGACCTCGCAGGAGCCATTGCCTGAGTCGAAGGATGACATTAACTCTGCTCATTCGTTGAGCGTTGAGGCTGCTTATATTAACCAGAATTTTTCGCAGCAGGTGCTTATTAGGGATGGGAATAAGGTTACTTTTGATGAGGCTAACCCTTTTGCGAATGAGGGTGAGGAGGTTGCTTCTGTGGCTTATAGGTATAGGAGGTGGAAGCTTGATGATGATATGTATCTTGTTGCGAGGTGTGAGGTGCATAGTGTTGTTGATGTGAACAAGCAGAGGTCGTTCCTTACTTTGAATGCGTTGAACGAGTTTGATCCTAAGTATTCCGGTGTGGATTGGAGGCAGAAGTTGGAGACTCAGAGGGGTGCTGTGTTGGCTACTGAACTTAAGAACAATGCGAATAAGTTGGCTAAGTGGACTGCTCAGGCTCTTTTGGCGAGTGCGGATACAATGAAGTTAGGGTATGTGTCGAGGATTCATCCCCGCGATCATTTCAATCATGTGATTTTGGCTGTGGTTGGCTATAAACCCAGGGACTTTGCAGCACAGATTAATTTGAACACGACGAATATGTGGGGGATTGTGAAGTCTATTGTGGACTTGTGCATGAAATTGAATGAGGGGAAGTATGTTCTTGTGAAGGATCCATCTAAGCCCCAGGTTAGGATTTACGAGGTTCCCGCGGATGCGTTTGAAAATGACTATGTGGAGGAGCCACTTCCGGAGGATGAACAAGTTCAGCCTCCAGCAGAAGGCGCCGAGGGGGGAGAAGCAGCCGCTACTACTAATGATGTGGAAGACAAGCAGATAGATGGTCAAGCTTAA

Predicted protein sequences of Glyma15g08150

Limit To All Plant Sequences

>Glyma15g08150.1   sequence type=predicted peptide   gene model=Glyma15g08150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKAFDIGAVPFNADGWGPPDNATSGSNNNNLPLNVPFAPFSRSDKLGRIADWTRNFNNPTRSKNPADAVFDFANDDSFPASADDDASFRLVDGKPPPRPKFGPKWRFQQQRQLPQRRDEEVEAKKREQEKERARRDRLYHMNRSNPNQQRREAAVFKSSVDIQPEWNMHDQIPFSTFSKLSFTVPEPEDLLLCGALEYYDRTYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINSAHSLSVEAAYINQNFSQQVLIRDGNKVTFDEANPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVHSVVDVNKQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADTMKLGYVSRIHPRDHFNHVILAVVGYKPRDFAAQINLNTTNMWGIVKSIVDLCMKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEDEQVQPPAEGAEGGEAAATTNDVEDKQIDGQA*

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