Glyma15g08110 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g08110

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5703391
stop:	5706144
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26250	AT	Annotation by Michelle Graham. TAIR10: 3-ketoacyl-CoA synthase 10 \| chr2:11170799-11173059 REVERSE LENGTH=550	SoyBase	E_val: 0	ISS
GO:0000038	GO-bp	Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0008610	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid biosynthetic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009913	GO-bp	Annotation by Michelle Graham. GO Biological Process: epidermal cell differentiation	SoyBase	N/A	ISS
GO:0042335	GO-bp	Annotation by Michelle Graham. GO Biological Process: cuticle development	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
GO:0016747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups	SoyBase	N/A	ISS
PF08392	PFAM	FAE1/Type III polyketide synthase-like protein	JGI		ISS
PF08541	PFAM	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal	JGI		ISS
UniRef100_I1MEJ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 3-ketoacyl-CoA synthase n=1 Tax=Glycine max RepID=I1MEJ6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MEJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: 3-ketoacyl-CoA synthase n=1 Tax=Glycine max RepID=I1MEJ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g08110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08110

Paralog	Evidence	Comments
Glyma13g31240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g074700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g08110

Limit To All Plant Sequences

>Glyma15g08110.1   sequence type=CDS   gene model=Glyma15g08110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAAAGAAAGTGAGGAGTTTTCCACAGAGATTGTGCAGAGAGGTGTTGAGAACTCTGGCCCAAATGCTGGCTCTCTTTCTTTCTCTGTGAAAGTGAGGCCTAGACTGCCAGATTTCCTTAGTTCAGTTAATCTAAAATATGTGAAATTGGGTTATGGCTACCTCATAAGCCATCGCTTGTACTTATTGCTGGCACCACCTCTCCTTGCAGTCTTCATTGCTCGTATTGGAAAGTTCACTTGGCAAGACCTCTATGAGAAATATGGCCTCATTGAGGTCCTATTTATATCAGCACTTTTGTGCCTAATGCTATATTTTTATGCTGACTTAACACCCGGCTCTACCTATTTGCTTGATTTCTCATGTTTTCTCCCTTCAAATGAATACAAGATCTCTAAGGCAGAGTTCATTCAGTTGGCCAAAAAATCTAGGAATTTCAATGAAACCGCCATTGAGTTTCAAGAACGAGTTCTTAAGAAATCTGGCATAGGCGATGAAACCTACCTGCCAAAAGGAGTTTTCCGCCCTGGTTACAGAAACTCACTGAATGATGGCAGGCAAGAGGTATCAATGGTGATGTTTGGGGCAATTAAGGACCTTCTTGCTGCCACAAAAGTGAAACCAAAGGATATCAGAATCCTGATCGTAAACTGTGGAATACTAAACACCACCCCATCCCTCTCATCAATGATAGTAAACCATTTCAAGCTTAGGCATGATATCCATAGTTTCAACCTTGGTGGGATGGGTTGCGCTGCTGGAATCACAGCTATTGATCTTGCTAAAGACCTTCTGGATGCTTATCCAAGAACTTATGCACTTGTAGTTAGCACAGAAGCTGTGAGCTCTACATGGTACAGTGGCAATGACATTGACATGTTGCTTCCCAATTGCTTCTTCAGAATGGGAGCTGCAGCCATCATGCTCTCAAATTTCTGTCTAGATAGATGGCGCGCCAAGTATGAACTCAAACAGCTGGTCCGAACACACAAAGGGATGGACAACAGAAGCTACAAAAGCATACATCAAAAGGAAGACAGTGAAGGGAGGAAGGGCATTTCTGTGAGCAAAGATGTCATAGAGGTTGGAGGCCATGCATTAAAGGCCAACATCACCACACTAGGCCCACTAGTGCTACCCGTTTCAGAGCAGCTTCACTTCTTCACCAACTTGATCTTCAAGAAAAAGAAAACAAAGCCATACATTCCTGATTACAAGCTGGCATTCGAGCACATGTGCATTCTGGCAACAAGCAAGAAAGTGCTGGATGAGATTCAGAAGAATTTGGAGCTCACAGAGGAGTACATGGAAGCATCAAGGAAGACATTGGAGCGATTTGGCAACACATCAAGCAGCAGCATTTGGTATGAACTGGCTTATCTTGAGTTAAACTCAAGGATCAAAAGGGGTGATCGGGTTTGCCAGATAGCTCTTGGGGCCGGGTTCATGTGTAACAGTGTTGTGTGGAAGGCCCTTAGGAATGTTGGGAGACCCAAGCAGAGTCCTTGGATTGAGGATGAATGCTGA

Predicted protein sequences of Glyma15g08110

Limit To All Plant Sequences

>Glyma15g08110.1   sequence type=predicted peptide   gene model=Glyma15g08110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKESEEFSTEIVQRGVENSGPNAGSLSFSVKVRPRLPDFLSSVNLKYVKLGYGYLISHRLYLLLAPPLLAVFIARIGKFTWQDLYEKYGLIEVLFISALLCLMLYFYADLTPGSTYLLDFSCFLPSNEYKISKAEFIQLAKKSRNFNETAIEFQERVLKKSGIGDETYLPKGVFRPGYRNSLNDGRQEVSMVMFGAIKDLLAATKVKPKDIRILIVNCGILNTTPSLSSMIVNHFKLRHDIHSFNLGGMGCAAGITAIDLAKDLLDAYPRTYALVVSTEAVSSTWYSGNDIDMLLPNCFFRMGAAAIMLSNFCLDRWRAKYELKQLVRTHKGMDNRSYKSIHQKEDSEGRKGISVSKDVIEVGGHALKANITTLGPLVLPVSEQLHFFTNLIFKKKKTKPYIPDYKLAFEHMCILATSKKVLDEIQKNLELTEEYMEASRKTLERFGNTSSSSIWYELAYLELNSRIKRGDRVCQIALGAGFMCNSVVWKALRNVGRPKQSPWIEDEC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain