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Report for Sequence Feature Glyma15g08080

Feature Type:gene_model
Chromosome:Gm15
Start:5675040
stop:5676331
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g08080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53035AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19761866-19762318 REVERSE LENGTH=150 SoyBaseE_val: 8.00E-65ISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1MEJ3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MEJ3_SOYBN SoyBaseE_val: 2.00E-102ISS

Expression Patterns of Glyma15g08080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08080
ParalogEvidenceComments
Glyma13g31270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g074400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g08080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g08080
>Glyma15g08080.1   sequence type=CDS   gene model=Glyma15g08080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGGAGAATGGCATCGTCGGCATTTATGGTGATCTGCATCCTGCACTCGGTGATAGCAATGACATGTGGGGCCCTGATGATGTTCTACATGAAGGAGGTCTACACCTTCGGCCACGGTGTGCAGGCCGCCACCAAGCTCTTGGGATCCACGCCGCACGACCAGCTTCTCATCAAGACCTCCGATTCCTTCTCCGGCTTGCTCCTCGTCGCCATTGGCTTCCTCCTCTTCATGGTGTCGTTTGTTAAAGATCGTGACTTTCAGGTCTTCTTCGCCAAGGGTTGCACGCTTCTCCACCTCTTCATGGCCATGTGGAGGGTCTACTTCGAACGCAAGGTCGAGGATCTCGCCTTGGATTGGCTCCGCCAGACTGTTGGCGATTTTCTCTTGGCCCTTTCGTGGGTTTTCTTCCTTGTTTACTCTTGGAGGGAGAAGTATGATTAG
Predicted protein sequences of Glyma15g08080
>Glyma15g08080.1   sequence type=predicted peptide   gene model=Glyma15g08080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRRMASSAFMVICILHSVIAMTCGALMMFYMKEVYTFGHGVQAATKLLGSTPHDQLLIKTSDSFSGLLLVAIGFLLFMVSFVKDRDFQVFFAKGCTLLHLFMAMWRVYFERKVEDLALDWLRQTVGDFLLALSWVFFLVYSWREKYD*






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