Glyma15g08040 - SoyBase

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Report for Sequence Feature Glyma15g08040

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5652372
stop:	5659773
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33770	AT	Annotation by Michelle Graham. TAIR10: phosphate 2 \| chr2:14277785-14281482 REVERSE LENGTH=907	SoyBase	E_val: 0	ISS
GO:0006301	GO-bp	Annotation by Michelle Graham. GO Biological Process: postreplication repair	SoyBase	N/A	ISS
GO:0006817	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate ion transport	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0055062	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate ion homeostasis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0417	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF12	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_G7IPT0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme family protein n=1 Tax=Medicago truncatula RepID=G7IPT0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AB89	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AB89 related cluster n=1 Tax=unknown RepID=UPI000233AB89	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g08040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08040

Paralog	Evidence	Comments
Glyma13g31290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g074200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g08040

Limit To All Plant Sequences

>Glyma15g08040.1   sequence type=CDS   gene model=Glyma15g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCTCACATGACTGATTTGGATTGGGAGACTTCCAGTGACAGCAGCAGCTGTGAGGATCAAGAGGATATTGATTTTCGATATGGTGGACAAGCTCGGAGCATATTATCAAGTTTAGAGGAAAGCATTGTGAGGATTGATGATTTTCTCTCATTTGAGAGGGCATTTGTCCGTGGGGATGTGGTATGCGCCTCCTCAGACCCGTCTGGACAGATGGGGAGGGTCATAAATGTTGATGTGTTGGTGGACTTGGAAAATGTTCAAGGAAAGAAATTAAAAAATGTGAACTCCAAGAAACTTATGAAGATTCGCTCCATTTCAGAAGGTAATTGTGTAATTAAGGGACCATGGATTGGCCTGGTTCAGAGGGTAGTAGACAGAGTGACTATATTGTTTGATGATGGAACTAAATGTGAGGTCATTACCTTGGAAAAAGATAAGCTGTTACCACTGACTCATAATTTTCTTGAAGATTTGCAGTGTCCATACTATCCTGGGCAGAGAGTAAAGGTTAATACCTCCACAGCTTCCAAACCAGCTAGATGGCTGTGTGGCACTTGGAAAGACAATCATGATGAAGGAACTGTTTGTGCTGTGGAAGCAGGTTTGGTTTATGTTAATTGGCTTGCCTCTGTTCTTTTGGGCTCCAATTTTAATGTGAGTGTTCCTCCATGCTGGCAAGATTCCAAAAACTTGACCTTGTTGTCCTGTTTTTCACATACAAACTGGCAACTTGGTGACTGGTGCATGCTCCCAGTTGTGGACCAAAAGGAAGAGATGATTCAAGATGCATCTACTTGTGATGCTTATAATGAGCATGGTATGGCTAGAGGATATAAGAGAAGAAATCTTAACGTTGGGGAATTATTTCTAATTGAGAAGATAAAGACCAAAGTTGATGTTGTTTGGCAAAATGGTGAACATACTTTGGGATTGGATCCACACAACTTAGTCCCAGTGAATGTCATAAACACTCATGAATTTTGGCCCCAGCAGTTTGTGCTGGAAAAAGGTGCTTCCGATGATCCTCTTAAGCCTAGCAAACAAAGATGGGGTGTTGTTCTTTCCATGGATGCAAAAGAGCATACTGTGAAGGTGCACTGGAGAACTGTTCCCACATCTGAGACAGATAATTTAGCTGGAGACACAATGATTGAGACTGTGAGTGCCTATGAACTTATCGAGCACCCAGATTACTCCTGTCGTTTTGGTGATATTGTGTTCAAGGTGGCTCAAAAACTTGGTTATGAAGCTGATAGAGATAATGCAAAGTCAGTGACTGACTTGAATGTGGAAGTTCCTCTGATAAACTGGGACCAAATCAGTTATCCGAATAAGTCTGTAGATAACAGTTACCTCTCCTGTATTGGCAATGTTACTGGTTTTGAAGATGGTGACGTGGAGGTGAAATGGGCTACTGGTTTAACAACCAAGGTTGCACCTTATGAAATTTTTCAATTTGATAAGCACGAAGATTCAACTGCAACCCCTGTTCCTTATGAAGCAAATGTTGAGGAGTTGACTCCAGAGATGATTGGAAGTCAACCATCCGACAAGAAGGGAAAGGACTTGTTAGATTGTGATGGCTATAGAGATAATTGTGAAAAGCATCCAGGAGAAAGTAGTTCCTCTTCCCTTCCTCAAGCTGCCTTTGAACTTTTCTCCAGTATTAAGGCCAGCATATTCAAAACACTTGGTGTAACATCACTTTCCGGAAAATTCTCCCCAGTCCCTGCATTTGAAGAGGGCAGTGAATCTGGCTGCCTTGATAAGAAAGATTTGGACACTTGTGATCCTGAATCTGAATCTGAATCACATCCAGTGAGCAAGATGAAGTCTTCTGAAGACATAACTCCTTATTGTGAAGTTATTAGGACTCATGAGAGGAATGATTTTCCAGTTTCTTTAGACAACAAAAACAGTTCAGATCAGTTGAAGCAGTTTGATGTAATTGATAATTGCTCAGACCACCACTTTTTTCATGAGGGGAAAGGATTGACATCATCTCAGTTTAAAAAGGGTTGGGTGAAGAAGTTACAACAAGAATGGAGCATCCTGGAGAAAAATCTTCCTGAAACTATTTATGTCCGTGTTTTTGAAGAAAGAATGGATCTCATGAGAGCAGCCATTGTCAGTGCATCAGGGACACCTTATCATGATGGCTTGTTTTTCTTTGATATATGTTTCCCTCCAGAGTATCCCAGTGAACCCCCTATGGTGCATTATAATTCTGGCGGGCTACAATTAAATCCAAATTTGTACGAGTCAGGGAAAGTCTGTCTGAGTCTCCTAAACACGTGGACTGGTACAGACACCGAAGTGTGGAACCCTGGAGCTTCCACAGTTCTTCAAGTTCTTCTTTCTCTGCAGGCCCTTGTCCTTAATGAGAAGCCTTATTTCAATGAGGCTGGATATGATCAACAAATTGGTAGAGCTGAAGGGGAGAGAAACTCAGTGAGTTACAATGAGAATGCTTCCCTTGTCACCTGCAAATCCATTTTGTATCTTAATAGAAAGCCTCCCAAGCATTTTGAGGCATTGGTGGAAGAGCACTTTAGACAGCGCTCCAAACATATACTTCTGGCTTGTAAGGCATATCTTGAAGGAGCTCCTATTGGATGTGCTTTTGGTGACGGAAAAACTGAGCATGAAAACCAGAAAGGAACTTCTACTGGATTTAAATTAATGCTTTCTAAGCTCTTCCCAAAGCTAGTAGAGGCATTTTCTGACAAGGGAATTGATTGCAGCCAGTTTGCTGAGATGCATAAGTAA

Predicted protein sequences of Glyma15g08040

Limit To All Plant Sequences

>Glyma15g08040.1   sequence type=predicted peptide   gene model=Glyma15g08040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAHMTDLDWETSSDSSSCEDQEDIDFRYGGQARSILSSLEESIVRIDDFLSFERAFVRGDVVCASSDPSGQMGRVINVDVLVDLENVQGKKLKNVNSKKLMKIRSISEGNCVIKGPWIGLVQRVVDRVTILFDDGTKCEVITLEKDKLLPLTHNFLEDLQCPYYPGQRVKVNTSTASKPARWLCGTWKDNHDEGTVCAVEAGLVYVNWLASVLLGSNFNVSVPPCWQDSKNLTLLSCFSHTNWQLGDWCMLPVVDQKEEMIQDASTCDAYNEHGMARGYKRRNLNVGELFLIEKIKTKVDVVWQNGEHTLGLDPHNLVPVNVINTHEFWPQQFVLEKGASDDPLKPSKQRWGVVLSMDAKEHTVKVHWRTVPTSETDNLAGDTMIETVSAYELIEHPDYSCRFGDIVFKVAQKLGYEADRDNAKSVTDLNVEVPLINWDQISYPNKSVDNSYLSCIGNVTGFEDGDVEVKWATGLTTKVAPYEIFQFDKHEDSTATPVPYEANVEELTPEMIGSQPSDKKGKDLLDCDGYRDNCEKHPGESSSSSLPQAAFELFSSIKASIFKTLGVTSLSGKFSPVPAFEEGSESGCLDKKDLDTCDPESESESHPVSKMKSSEDITPYCEVIRTHERNDFPVSLDNKNSSDQLKQFDVIDNCSDHHFFHEGKGLTSSQFKKGWVKKLQQEWSILEKNLPETIYVRVFEERMDLMRAAIVSASGTPYHDGLFFFDICFPPEYPSEPPMVHYNSGGLQLNPNLYESGKVCLSLLNTWTGTDTEVWNPGASTVLQVLLSLQALVLNEKPYFNEAGYDQQIGRAEGERNSVSYNENASLVTCKSILYLNRKPPKHFEALVEEHFRQRSKHILLACKAYLEGAPIGCAFGDGKTEHENQKGTSTGFKLMLSKLFPKLVEAFSDKGIDCSQFAEMHK*

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