Glyma15g08030 - SoyBase

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Report for Sequence Feature Glyma15g08030

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5648724
stop:	5651520
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g08030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21700	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF2921) \| chr4:11529956-11532844 FORWARD LENGTH=962	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF11145	PFAM	Protein of unknown function (DUF2921)	JGI		ISS
UniRef100_I1MEJ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MEJ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g08030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g08030

Paralog	Evidence	Comments
Glyma13g31300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g08030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g074100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g08030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g08030

Limit To All Plant Sequences

>Glyma15g08030.1   sequence type=CDS   gene model=Glyma15g08030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACTCCATCATCAAATCCTCTCTTCATCTTCTTCCTTTTCTTCTTCCTTTTCTACTCCTCTGTATCACTTAATCCTTCAGATTTGGCTTTCGAATCGACCTACGCTCGCCTCTGCAACCACCATGTCCCTGCACCGGCGTCCCGTTCCGACGAAGGAACCGTCCCCGGCATCGCCGACGAACTCCGGTTCCAATCCGGCTACTTCGCCGGCGGTGACCACTTCTTTAACCGATCCGTCACCACGAAGAATCACGCGTCGTTTCGCGTGACCTCCGTTCGCCGAAGCGCGAGTGACGGCGTGTTCGAATTACGCGGGCGAATGCTTCTTCAGCAGCGAAGAGGAGCGACGCCGGCGCCGGGAAGGTCGCTCCGGCAGGTTTATCCGGGCCGGAGAGTGTCGCATTGGGGAGTTTTGCAGTGGATGCGCGTTTCTCTGAGTGGATTTTGGTCGCAATCTTCTGGTAACCTTTGTATGTTCGGAATAGGATCATCTCATGTTAAGATGCGAAATGCTAATGTTGTTCTTCCCGCTTCAGATTTGAGCCTTTTGGATTGTTTGATAAGCGGAACACTAGAAAGCTTTGATGACAAGAATAATTTGCAATATTTTGAACCTATTTCGATATTGGCTTTGTCTCAGAGTTCGAATTACAAGTTTACAATGGCTGGGAATGAAAAGGATAATGGTTGTGGAGGTGGATCTGATGGGGAGGGTTTGTCCCTTGGAAACTTTAGCCAAGGTGCCTGCACTACTTTTCTTGGACACACGGATAGGTTTGAATTGGAATATGGGAGTCACTGTGGTAATGGTAGTTGCAATCCTGTTGGTGGTAATGGAGAATTGCCTAATTTTATGCTTTTTCACGCCACTCGATGTGTGGAGAGGCAGAAGGTTCAGATTCTGGTGGGTTTCCCTGATTCCGGCTACCAGGATGCTGTGTTTCCATTTCATCCGAATACGACGTTGGTTTCTGAGGGGATGTGGGATGAGAAGGAGAATCGACTATGTGCGGTTGCATGCCGGATCTTGAACTTCACGGAATCTTTGGTTAATCCTTATGTTGGAGATTGCAAGACTAGGCTCAGTTTAAGGTTTCCTGCAGTTTTATCTTTGAGGAACAGGAGTACGGTTTTGGGGCAGATTTGGAGTGACAAAGTGGTTGGTGAATCCGGGTACTTCAGTAAAGTTGGATTTCAGGGTTCGTCAAGGGTATCAAAAAGCCTCCAAGGTTTCCTATACAAGTATGCTGATACTGAGAGGGTGAGAAAATCTTGTGCGGAAAAGATGAATGCTAAAGGGAAGGGAAATACATATCCGGATGGATATTCTTCTGATATGGCATTTAGCATGTTAGTGACAAACAGCAGAGGGCAAGTGGCTCAAGGTTACTCATCACCACTATCTGTCTGTGATCAAATTTATAGTGGACAGTCGTATGGGGCTCCATTTGTGTTGACAACGGGAAAGCCAAAAGCACATGCTACTCAATCAGATAAGTACAGCAATTTGTTGAATGTCAGCTATACGATAAGCCTTAATCCCCCTCCTGATTTCAAGTTTGGCAGAGGAGTCTCATCAACCAAAGTCAAAATTGGGGCTGAAGGAATTTACAATAGGAATACTGGTGTTTTGTGTATGATAGGATGTCAGCATTTGAGATCAACAGACAAAATACTGATAAAGAATGAGACTCTGGACTGTGAAATCATGGTTAATGTCCAGTTTCCTCCATTGAATGCAAAAGGAGGTGAATCTCTTACAGGAACTATAGAAAGCACACGACAAAAGTCAGACCCTTATTATTTTGATCCGCTTCAGTTGTCTTCATATTCCATTTACAGAAACCAAGCTGATGCTTCCATTTGGAGAATGGATTTTGAGTTAATTATGGTATTGGTGTCAAACACACTGGCCTGTGTGTTTGTAGGATTGCAACTTCTCCATGTGAAAAAGCACCCGGATGTCCTTCCTTACATTTCTGTTGTGATGCTTGCAGTTATTACTCTAGGTCACATGATTCCCTTGATATTGAACTTCGAAGCTTTATTCATGGCAAACCACAGTGTGCAGAATACTTTTCTTGGGAGTGGAGGTTGGCTTGAAGTGAATGAGGTAGTTGTGAGGATGGTGACAATGGTAGCCTTTCTTCTAGAGTTGCGCCTTGTACAATTGACCTGGTCCTCAAGACAGGGTGAGGGAAGCCATCCCGGTCTGTGGGATTCTGAAAAAAAAGCTCTTTATATCACTCTACCATTGTACATTGGTGGTGGATTGACTGCTTGGTTGGTGCACATATCGAAGACTTCTCATCAAAAAAGATTTAGACCATTTCGGCTTTCACGCCACAAGTTTAGTCTTCCTCGTGAACATTTTTACCGACCTCCTTCCCTCTGGGAAGACTTTAAATCTTATGCTGGTTTGCTCCTGGATGGTTTTCTGCTCCCTCAGATTCTGCTTAACATAATATTTAACTCAGAAACGAAAGCTCTAGCATCTTCCTTTTATGTTGGGACAACCATTGTTCGTATACTGCCCCATGCATATGATCTTTATAGAGCGCACAGTTCTGCATGGTACCTTGATTTATCATATATATATGCAAATCATAGAATGGATTTTTATTCCACAGCCTGGGACATCATAATCCCTAGTGGTGGTATTTTGTTTGCTCTCCTTGTATACTTTCAGCAGAGATTTGGCAGTCGGTGCATTCTTCCAAAGAGGTTCAGAGAAAGTACTGCTTATGAGAAAGTACCGGTTATTGGCAATGACGATTTATGA

Predicted protein sequences of Glyma15g08030

Limit To All Plant Sequences

>Glyma15g08030.1   sequence type=predicted peptide   gene model=Glyma15g08030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTPSSNPLFIFFLFFFLFYSSVSLNPSDLAFESTYARLCNHHVPAPASRSDEGTVPGIADELRFQSGYFAGGDHFFNRSVTTKNHASFRVTSVRRSASDGVFELRGRMLLQQRRGATPAPGRSLRQVYPGRRVSHWGVLQWMRVSLSGFWSQSSGNLCMFGIGSSHVKMRNANVVLPASDLSLLDCLISGTLESFDDKNNLQYFEPISILALSQSSNYKFTMAGNEKDNGCGGGSDGEGLSLGNFSQGACTTFLGHTDRFELEYGSHCGNGSCNPVGGNGELPNFMLFHATRCVERQKVQILVGFPDSGYQDAVFPFHPNTTLVSEGMWDEKENRLCAVACRILNFTESLVNPYVGDCKTRLSLRFPAVLSLRNRSTVLGQIWSDKVVGESGYFSKVGFQGSSRVSKSLQGFLYKYADTERVRKSCAEKMNAKGKGNTYPDGYSSDMAFSMLVTNSRGQVAQGYSSPLSVCDQIYSGQSYGAPFVLTTGKPKAHATQSDKYSNLLNVSYTISLNPPPDFKFGRGVSSTKVKIGAEGIYNRNTGVLCMIGCQHLRSTDKILIKNETLDCEIMVNVQFPPLNAKGGESLTGTIESTRQKSDPYYFDPLQLSSYSIYRNQADASIWRMDFELIMVLVSNTLACVFVGLQLLHVKKHPDVLPYISVVMLAVITLGHMIPLILNFEALFMANHSVQNTFLGSGGWLEVNEVVVRMVTMVAFLLELRLVQLTWSSRQGEGSHPGLWDSEKKALYITLPLYIGGGLTAWLVHISKTSHQKRFRPFRLSRHKFSLPREHFYRPPSLWEDFKSYAGLLLDGFLLPQILLNIIFNSETKALASSFYVGTTIVRILPHAYDLYRAHSSAWYLDLSYIYANHRMDFYSTAWDIIIPSGGILFALLVYFQQRFGSRCILPKRFRESTAYEKVPVIGNDDL*

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