Glyma15g07860 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g07860

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5529074
stop:	5531549
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g07860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48560	AT	Annotation by Michelle Graham. TAIR10: chlorsulfuron/imidazolinone resistant 1 \| chr3:18001530-18003542 REVERSE LENGTH=670	SoyBase	E_val: 0	ISS
GO:0009082	GO-bp	Annotation by Michelle Graham. GO Biological Process: branched-chain amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003984	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetolactate synthase activity	SoyBase	N/A	ISS
GO:0004737	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyruvate decarboxylase activity	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0030976	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thiamine pyrophosphate binding	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG4166	KOG	Thiamine pyrophosphate-requiring enzyme	JGI		ISS
PTHR18968	Panther	THIAMINE PYROPHOSPHATE ENZYMES	JGI		ISS
PTHR18968:SF13	Panther	INDOLEPYRUVATE DECARBOXYLASE	JGI		ISS
PF00205	PFAM	Thiamine pyrophosphate enzyme, central domain	JGI		ISS
PF02775	PFAM	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	JGI		ISS
PF02776	PFAM	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	JGI		ISS
UniRef100_I1MEG7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acetolactate synthase n=1 Tax=Glycine max RepID=I1MEG7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MEG7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Acetolactate synthase n=1 Tax=Glycine max RepID=I1MEG7_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma15g07860

Locus	Gene Symbol	Protein Name
ALS4	AHAS4	acetohydroxyacid synthase gene 4
ALS4	ALS-4	Acetolactate synthase gene 4
ALS4	ALS4	Acetolactate synthase gene 4

Expression Patterns of Glyma15g07860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g07860

Paralog	Evidence	Comments
Glyma13g31470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g07860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g072500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g07860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g07860

Limit To All Plant Sequences

>Glyma15g07860.1   sequence type=CDS   gene model=Glyma15g07860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCAACCACTGCCCCAAAACCTGCGTTCACCGCCCTCCCTTCTTCATCATCATCATCTTCCCAGAAGCCCTTTCTGCGTCTCGCCCTCCAATTTCCCTCCCTCCCAAACAGTTCCTATCACTCCCAACGCCCTTCTCTCAAAATCTCCAGCGCCCTCTCCGATGCAACCGCGAAAACCACCACCGCCGCCGCCGCCGAAGATTTTGTCTCCCGATTCGGCCTGGAGGAGCCCCGCAAGGGCGCCGACATCCTCGTGGAGGCGCTGGAGCGGCAGGGCGTGACGGACGTGTTCGCCTACCCCGGTGGTGCTTCCATGGAGATCCACCAGGCACTCACCCGCTCCGCCTCCATCCGCAACGTCCTCCCCCGCCACGAGCAGGGTGGCGTCTTCGCCGCCGAGGGCTACGCCCGTTCCTCCGGCATCCCCGGCGTCTGCATCGCCACCTCCGGCCCCGGCGCCACCAACCTCGTCAGCGGCCTCGCCGACGCCATGCTCGACAGCGTCCCCCTCGTCGCCATCACCGGCCAGGTCCCCCGCCGCATGATCGGCACCGACGCCTTCCAAGAAACCCCCATCGTCGAGGTAACGCGTTCCGTCACAAAGCATAACTATCTCGTTCTAGATGTTGATGATATTCCTAGAATCGTTAATGAAGCGTTTTTCTTAGCCACTTCGGGTAGACCTGGCCCTGTGTTAATTGATATACCCAAAGATATTCAGCAACAGTTTGCGATTCCTAATTGGGATCAACCAATTAGGTTACCTGGTTACATGTCTAGGTTGCCTAAGTCTCCCAATGAGAATCATTTGGAGCTTATTGTGAGGTTGGTTATGGAATCTAAGAAACCTGTTTTGTATGTTGGTGGTGGTTGTTTGAATTCTAGTGAAGAATTGCGGCGTTTTGTCGAGCTCACTGGTGTTCCTGTTGCTAGTACTTTGATGGGTCTTGGTGCTTATCCCATTGCTGATGAGAATTCTCTTCAGATGCTTGGGATGCACGGGACTGTTTATGCTAATTATGCTGTGGACAAGGCTGATATTTTGCTTGCGTTTGGGGTGAGGTTTGATGACCGTGTCACGGGGAAGCTCGAGGCTTTTGCGAGCCGGGCTAAGATAGTTCACATTGATATTGATTCGGCAGAGATTGGAAAGAACAAGCAGCCGCATGTTTCGGTTTGCGCTGATTTGAAGCTGGCGTTGAAGGGGATTAATCACATGTTGGAGAGCAGAGGGGTTGGGGGGAAGCTTGATTTTAGAGGTTGGAGGGAAGAGCTGAATGAGCAGAAGCGAAGGTTTCCTTTGAGCTATAAGACTTTTGAGGATGAGATTTCTCCTCAGTATGCTATACAGGTTCTTGATGAGTTGACTAATGGGGATGCTATTGTGAGTACTGGAGTTGGACAGCACCAGATGTGGGCTGCTCAGTTTTACAAGTACAAGAGGCCTAGGCAGTGGTTAACATCCGGTGGTCTTGGTGCTATGGGGTTTGGATTGCCGGCTGCCATCGGTGCGGCTGTGGCTAATCCGGGTGCGGTTGTGGTTGACATTGATGGTGATGGGAGTTTTATAATGAATGTTCAGGAGCTGGCCACTATCAAGGTAGAGAAGCTCCCGGTTAAGATATTGTTGTTGAATAATCAACACTTGGGTATGGTTGTTCAGTGGGAGGATCGGTTCTATAAGTCTAACAGGGCTCACACGTATCTGGGAGACCCCTCTAATGAGAATGCCATATTTCCTGATATGTTGAAGTTTGCTGATGCTTGCGGGATACCGGCAGCTCGTGTGACCAAGAAAGAAGACCTTAGAGCGGCAATTCAGAAAATGTTGGACACCCCTGGCCCCTATCTTCTTGATGTCATTGTACCCCATCAAGAGCATGTCTTGCCCATGATTCCTAGCAATGGAACCTTCCAGGACGTGATAACTGAGGGTGATGGCAGGACAAGTTACTGA

Predicted protein sequences of Glyma15g07860

Limit To All Plant Sequences

>Glyma15g07860.1   sequence type=predicted peptide   gene model=Glyma15g07860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATTAPKPAFTALPSSSSSSSQKPFLRLALQFPSLPNSSYHSQRPSLKISSALSDATAKTTTAAAAEDFVSRFGLEEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSASIRNVLPRHEQGGVFAAEGYARSSGIPGVCIATSGPGATNLVSGLADAMLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSVTKHNYLVLDVDDIPRIVNEAFFLATSGRPGPVLIDIPKDIQQQFAIPNWDQPIRLPGYMSRLPKSPNENHLELIVRLVMESKKPVLYVGGGCLNSSEELRRFVELTGVPVASTLMGLGAYPIADENSLQMLGMHGTVYANYAVDKADILLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALKGINHMLESRGVGGKLDFRGWREELNEQKRRFPLSYKTFEDEISPQYAIQVLDELTNGDAIVSTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPGAVVVDIDGDGSFIMNVQELATIKVEKLPVKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGDPSNENAIFPDMLKFADACGIPAARVTKKEDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSNGTFQDVITEGDGRTSY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain