SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21670 | AT | Annotation by Michelle Graham. TAIR10: C-terminal domain phosphatase-like 1 | chr4:11511511-11516922 FORWARD LENGTH=967 | SoyBase | E_val: 0 | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003725 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: double-stranded RNA binding | SoyBase | N/A | ISS |
| GO:0004647 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoserine phosphatase activity | SoyBase | N/A | ISS |
| GO:0016791 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatase activity | SoyBase | N/A | ISS |
| GO:0019204 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide phosphatase activity | SoyBase | N/A | ISS |
| PTHR23081 | Panther | RNA POLYMERASE II CTD PHOSPHATASE | JGI | ISS | |
| PF00035 | PFAM | Double-stranded RNA binding motif | JGI | ISS | |
| PF03031 | PFAM | NLI interacting factor-like phosphatase | JGI | ISS | |
| UniRef100_B9RZ63 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Double-stranded RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZ63_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MEF7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEF7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g07800 not represented in the dataset |
Glyma15g07800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g31511 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g072000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g07800.1 sequence type=CDS gene model=Glyma15g07800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGGTCTATGGTGTACCATGGAGAGATGGAAGTGGGAGAGGTGGAGATATACCCAGAAGAGAAAAAGAACATAGATCTGAAAGAAATCAGAATAAGTCACTTCTCGCAACCTAGTGAAAGGTGTCCACCGCTTGCTGTGCTTCACACCATTACTTCTTTTGGTATTTGCTTCAAAATGGAGTCATCGACCTCACAGACACGACAACAGCAGGATGTCCTCTTTCACTTGCACTCCTCATGTATCAGAGAGAACAAGACTGCTGTAATGCCACTTCGTGGGGAAGAAATACACTTGGTTGCAATGTATTCACGGAACAATGATAGACCATGTTTCTGGGGATTTATTGTTGCCTCTGGACTTTACAATTCATGCCTAACAATGTTAAATCTGAGATGTTTGGGTATAGTGTTTGATCTGGATGAAACCCTTGTAGTTGCAAACACAATGCGTTCTTTTGAGGATAAAATTGAGGTACTCCATAGAAAAATGAACTCTGAGGTCAATCCGCAACGAATTTCTACTATGCAGGCGGAGATAAAGCGATACTTAGATGACAAGAATATATTGAAGGAATATGCTGAAAATGATCAAGTTGTTGATAATGGGAAAGTGATAAAAATTCAATCTGAGATTGTTCCAGCATTGTCTGATAGTCATCAGCCTATAGTTCGACCACTGATCCGATTACAAGAAAAGAATATTATTTTGACACGCATCAATCCACAGATTCGTGATACTAGTGTTCTTGTGAGGTTAAGACCTGCATGGGAAGATCTTCGGAGCTACCTGACTGCAAGAGGGCGCAAGCGTTTTGAGGTTTTTGTTTGCACAATGGCTGAGAGGGACTATGCACTAGAAATGTGGAGGCTTCTTGATCCAGAATTGAATTTGATAAATTCGAAAGAACTGTTAGATCGTATTGTTTGTGTCAAGTCTGGTTTAAAGAAATCGTTGTTTAATGTATTCCAAAATGGCTTATGCCATCTGAAGATGGCATTGGTAATTGATGATCGCCTGAAAGTGTGGGATGAGAAAGACCAGCCGCAGGTGCATGTTGTCCCTGCATTTGCTCCATACTATGCTCCTCAAGCTGAAGCAAGCAATGCAGTCCCTACCTTGTGTCTTGCAAGAAGTGTTGCTTGCAATGTTAGGGGTGGCTTCTTCAAGGATTTTGATGATGGTCTTTTACAGAAGATCCCTCTAATTGCTTATGAAGATGATATCAAAGATATACCTTCTCCTCCCGATGTGAGCAATTATCTAGTTTCGGAGGATGATGCATCTGCTTCCAATGGAAATAAAAATTTGCTTCTATTTGATGGCATGGCAGATGCTGAGGTAGAAAGAAGATTAAAGGATGCAATATCAGCTTCTTCAACTGTCCCTGCAATGACCACTAATCTTGATCCTAGGCTTGCTTTCAATTCTTCTCTTCAATACACGATGGTGTCTTCTTCTGGAACTGTCCCACCCCCAACAGCACAAGCATCTATAGTGCAATTTGGCAATGTTCAGTTTCCTCAACCTAATACTCTAGTTAAGCCAATATGTCAAGTTACCCCTCCAGGACCGAGCTTGCATAGTTCTCCGGCCAGAGAAGAGGGTGAAGTGCCTGAATCAGAATTAGACCTAGATACCAGGCGTAGGCTTCTCATATTGCAACATGGGCAAGATACAAGGGAGCACACGTCAAGTGAACCCCCACTTCCCGTCAGACACCCCACACAAGTTTCTGCTCCCAGTGTCCCATCACGTAGGGGATGGTTTTCTGTAGAAGAGGAGATGGGTCCACAACAACTAAATCAGTTAGTACCCAAAGAATTTCCTGTAGGTTCTGAACCATTGCATATTGAGAAGCGCTGGCCCCGTCATCCATCCCTTTTCTCTAAGGTTGACGATTCTGTTTCCTCTGATAGAGTTTTCCATGAGAGCCACCAAAGATTGCCAAAGGAGGTGCATCATAGGGATGATCACTCAAGATTAAGCCAATCACTCTCTAGTTATCATTCTTTCCCAGGTGATGACATTCCCTTGAGTGGTTCATCTTACAGCAACAGGGATTTTGACTCTGAATCTGGACGTTCTCTATTTCATGCTGATATTACAGCTGGAGTATTACAGGAAATTGCACTGAAGTGTGGAACTAAAGTGGAATTTTTGTCTTCGTTAGTGGCTAGCACAGCACTGCAATTCTCCATTGAGGCATGGTTTGCTGGAAAAAAAGTTGGTGAAGGATTTGGTAGAACTAGAAGGGAAGCCCAAAATAAGGCTGCTGAGTGTTCAATCAAACAATTGGCTGATATATATATGTCTCATGCTAAGGATGACTCTGGTTCCACTTATGGTGATGTTAGTGGGTTTCATGGTTCAAACAACAATGGTTTTGTGAGTAGTGATCCTAGGTTGGAAGTCTCTAAAAGGTCAACAGATTCAATTTCTGCCCTCAAAGAATTTTGCATGATGGAGGGTCTTGCTGCCAATTTTCAATCTTCACCAGCTCCAGCATCAACACATTTTGCTCAGAAAGATGAAGTGCACGCACAGGTTGAAATAGATGGTCAGATCTTTGGTAAAGGGTTTGGATTAACATGGGAAGAGGCTAAAATGCAGGCTGCCAAGAAGGCACTTGAAAGTCTAAGAACAATGTTTAATCAAGGCACTCGGAAGAGGCATGGTTCTCCCAGGTCAATGCAAGGATTGGCAAATAAACGTCTAAAGCAAGAATATCCTCGAACTCTGCAGCGGATTCCCTATTCTGCTAGATATCCCAGGAATGCTCCTCTTGTTCCTTGA
>Glyma15g07800.1 sequence type=predicted peptide gene model=Glyma15g07800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRSMVYHGEMEVGEVEIYPEEKKNIDLKEIRISHFSQPSERCPPLAVLHTITSFGICFKMESSTSQTRQQQDVLFHLHSSCIRENKTAVMPLRGEEIHLVAMYSRNNDRPCFWGFIVASGLYNSCLTMLNLRCLGIVFDLDETLVVANTMRSFEDKIEVLHRKMNSEVNPQRISTMQAEIKRYLDDKNILKEYAENDQVVDNGKVIKIQSEIVPALSDSHQPIVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVFVCTMAERDYALEMWRLLDPELNLINSKELLDRIVCVKSGLKKSLFNVFQNGLCHLKMALVIDDRLKVWDEKDQPQVHVVPAFAPYYAPQAEASNAVPTLCLARSVACNVRGGFFKDFDDGLLQKIPLIAYEDDIKDIPSPPDVSNYLVSEDDASASNGNKNLLLFDGMADAEVERRLKDAISASSTVPAMTTNLDPRLAFNSSLQYTMVSSSGTVPPPTAQASIVQFGNVQFPQPNTLVKPICQVTPPGPSLHSSPAREEGEVPESELDLDTRRRLLILQHGQDTREHTSSEPPLPVRHPTQVSAPSVPSRRGWFSVEEEMGPQQLNQLVPKEFPVGSEPLHIEKRWPRHPSLFSKVDDSVSSDRVFHESHQRLPKEVHHRDDHSRLSQSLSSYHSFPGDDIPLSGSSYSNRDFDSESGRSLFHADITAGVLQEIALKCGTKVEFLSSLVASTALQFSIEAWFAGKKVGEGFGRTRREAQNKAAECSIKQLADIYMSHAKDDSGSTYGDVSGFHGSNNNGFVSSDPRLEVSKRSTDSISALKEFCMMEGLAANFQSSPAPASTHFAQKDEVHAQVEIDGQIFGKGFGLTWEEAKMQAAKKALESLRTMFNQGTRKRHGSPRSMQGLANKRLKQEYPRTLQRIPYSARYPRNAPLVP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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