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Report for Sequence Feature Glyma15g07650

Feature Type:gene_model
Chromosome:Gm15
Start:5395069
stop:5395766
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g07650
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61105AT Annotation by Michelle Graham. TAIR10: Toll-Interleukin-Resistance (TIR) domain family protein | chr1:22513616-22514492 REVERSE LENGTH=188 SoyBaseE_val: 6.00E-55ISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
PF01582PFAM TIR domain JGI ISS
UniRef100_G7INZ8UniRef Annotation by Michelle Graham. Most informative UniRef hit: TMV resistance protein N n=2 Tax=Medicago truncatula RepID=G7INZ8_MEDTR SoyBaseE_val: 5.00E-62ISS
UniRef100_I1MEE2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MEE2_SOYBN SoyBaseE_val: 4.00E-93ISS

Expression Patterns of Glyma15g07650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g07650 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g070500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g07650
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g07650
>Glyma15g07650.2   sequence type=CDS   gene model=Glyma15g07650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCAGTTTATTAGAGCCAAGCAGTGCCGTAATATCGTCCAGCCAGTGTACGATGTTTTCATAAACTACCGAAAGGTTGATAACGGAAGAACGTTCGTTCCTTTGCTCTATGATCATCTGAGGATCAAGGGAATCAAACCCTTCTTAGACACCATGAACATGAAACCTGGCCATAAGCTGTTTGAGCATATCAACAAGGCCATACATAGCTCCAAGGTTGGTGTTGCTGTCCTCACACATCGTTATTGCGATTCCTACTTCTGTCTCCACGAACTTACCCTTCTCAACGAGTCCAAGAAAAGGGTTGTCCCTATCTTTTATGACATCAAACCCTCACAGCTTCAGCTTAAGGGCAATGCACGTTATCCTCCTCAAGAGCTCCAAAGGTTCATGTCAGCTCTTGAGGAAACTAAATACACTGTAGGAGTCTCCTTTGATTCGTTAAATGGGGACTGGATGGAGCTGCAAAGAAAGATTTCGGATGCTGTGATCATGAACTTAATTGAGATAGAGGACGAGGAAACCCGCAATATGCAACCGTGA
Predicted protein sequences of Glyma15g07650
>Glyma15g07650.2   sequence type=predicted peptide   gene model=Glyma15g07650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQFIRAKQCRNIVQPVYDVFINYRKVDNGRTFVPLLYDHLRIKGIKPFLDTMNMKPGHKLFEHINKAIHSSKVGVAVLTHRYCDSYFCLHELTLLNESKKRVVPIFYDIKPSQLQLKGNARYPPQELQRFMSALEETKYTVGVSFDSLNGDWMELQRKISDAVIMNLIEIEDEETRNMQP*






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