Glyma15g07540 - SoyBase

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Report for Sequence Feature Glyma15g07540

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5309057
stop:	5313534
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g07540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11120	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plan	SoyBase	E_val: 4.00E-41	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1MEC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEC9_SOYBN	SoyBase	E_val: 1.00E-109	ISS

Expression Patterns of Glyma15g07540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g07540

Paralog	Evidence	Comments
Glyma13g31750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g07540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g069700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g07540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g07540

Limit To All Plant Sequences

>Glyma15g07540.1   sequence type=CDS   gene model=Glyma15g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAGAGAGCATAACATTAACAGTGGATGGCCACCAATAGGGGCCCCACTGAACGTGCAGAGAGATGAGTATGATCAGCATTGGAGTAACTTCGATAGCTCTGTGAATGCTGTTTCTTTTGGCTTTGTTGCCACTGCCATTCTTATTTCTATGTTCTTAGTCATGGCCATCTTTGAGAGGTTTCTCAAACCTACCTCGCCGGCCCTCTTGCCGTCCGGTGGCTGGAACCGTCGTCGGAGCTCTCAGATGGACTTCAATGGGAAGCTTGCTCACCCATCACCGAAAATGAGTTTGTATACCAGCTGGGTTTCAGTTTTAATGCCTGGAGATGTGACTCCTTCTTTCATTGCTCAACCTGTGCCTGCACCATGTTGCCCAGAACGAATATCATGGCCTTCACATCAACATAACACATTACCTTATTCCACTTACAACACCATGCCTAGTATCAACCAAGTATAA

Predicted protein sequences of Glyma15g07540

Limit To All Plant Sequences

>Glyma15g07540.1   sequence type=predicted peptide   gene model=Glyma15g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVREHNINSGWPPIGAPLNVQRDEYDQHWSNFDSSVNAVSFGFVATAILISMFLVMAIFERFLKPTSPALLPSGGWNRRRSSQMDFNGKLAHPSPKMSLYTSWVSVLMPGDVTPSFIAQPVPAPCCPERISWPSHQHNTLPYSTYNTMPSINQV*

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