Glyma15g07500 - SoyBase

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Report for Sequence Feature Glyma15g07500

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5261669
stop:	5267265
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g07500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61215	AT	Annotation by Michelle Graham. TAIR10: bromodomain 4 \| chr1:22573173-22575374 FORWARD LENGTH=475	SoyBase	E_val: 5.00E-92	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PTHR22880	Panther	FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS	JGI		ISS
PTHR22880:SF85	Panther	BRD4 (BROMODOMAIN 4), DNA BINDING	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
PF00439	PFAM	Bromodomain	JGI		ISS
UniRef100_G7ILH0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bromodomain protein n=1 Tax=Medicago truncatula RepID=G7ILH0_MEDTR	SoyBase	E_val: 3.00E-145	ISS
UniRef100_UPI000233B8CF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B8CF related cluster n=1 Tax=unknown RepID=UPI000233B8CF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g07500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g07500

Paralog	Evidence	Comments
Glyma13g31800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g07500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g069300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g07500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g07500

Limit To All Plant Sequences

>Glyma15g07500.1   sequence type=CDS   gene model=Glyma15g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACGGAGGTGATGGGGAGGTGGGGCACCTGGGAGGAGCTCCTCCTTGGTGGGGCCGTTCTCCGCTACGGAACCCGGAATTGGAACGTCGTCGCCGCCGAGCTCCGGGCACGAACAGCTTGTCCCTACACCATTACTCCTGAGGTCTGTAAAGCCAAATATGAAGACTTGCAACAGCGGTACACTGGGAACAAGGCTTGGTTTGAGGAACTTAGGAAGACTAGAGTAGCAGAGCTGAAAAGAGCTCTGGAGCTGTCTGAAGATTCAATTGGGTCTCTCGAATCTAAACTCGAAAGCCTCGAGGCTGGAAAGAATGAGAAAAAAGATGATTGTCATGTTGACAAAGGATCAGCTGGTCCAAAGTTACATGTAGCTTCACAGAAATTGGAAAGAGTTGAATCTTCCACTAAAGAGACATCAAAGGATGGGCTATCCGCTGGGAGTTTCACACATGAAACCAGGACAAACTGGTCTCCTGAATGTCCAGTTCCCGCAGGGTTTGCAGAAGATATGGAGACTAAGCCCGAGGTTTCACACTCCACTGAGCAGGCCAAAGTTTTGAATGTAGATGAGTTGACACGTACTATATATGAAGGACAAGGAGGAAGTTTTAAAAAACGGAGAGGGAAGAGGAAGAGGAAGGACTGTGGCAGAAATATGAAGGAAGCAAGTGTTGGGGAAAGTGACTTGTTAGATTCGGCTGATGTTGTGTCATGGTGTAAAGAAAGTTCTACCAGCAACTGTGGTGAAGTTGCCAAATCATGTGGTGTAGATGATCAAAATAGGAACTTGAAAAAGGATAGGGTGGAAGACATGATGGAGATTTTGGATTTTATTTTTGAAACTAAAGGTGCTTCGGCTTTCCAACGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATCCTGCAACACATGGACTTTGACACTATAAGGTCAAGAATTAGCAGCCAGACAATTAAGTCAAGTGTAGAACTTTTTCGGGACTTGCTCCTACTTACTAACAATGCCTTAGTCTTCTACTCCAAGAGCACTCGCGAATACAAAACTGCTCTACTGCTTAGAGGCATTGTCACCAAAAAAATGAGGGAAAGTTTGAAGGGTACGAGCAACAAAGCCACCACTCAAGCTACTAATTTTCCTATTAAATTACTTGTGCATAATCCTCATGTGAAACCAAGAAGTGTACGGCCAGGCAACAGAAAAATAGTTGCAAAGGCAGTTGGTGGCAAGAACTCTGCATCTGGGGAGTCACATGGAACTAAGAAACCTAGTAAAGTTGATTCTCCATCCTCAGTGGAATCCTTAACTATGAAGAAAAAAGGTTTTGGTAGACCAAAAAAGGTTGGACGTGGGGCTGCTGCAGGTCAAAGGCCTGCAATGCCAATGAAGGGAAAGAAAAGAGTTAGGACTAAGTGA

Predicted protein sequences of Glyma15g07500

Limit To All Plant Sequences

>Glyma15g07500.1   sequence type=predicted peptide   gene model=Glyma15g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTEVMGRWGTWEELLLGGAVLRYGTRNWNVVAAELRARTACPYTITPEVCKAKYEDLQQRYTGNKAWFEELRKTRVAELKRALELSEDSIGSLESKLESLEAGKNEKKDDCHVDKGSAGPKLHVASQKLERVESSTKETSKDGLSAGSFTHETRTNWSPECPVPAGFAEDMETKPEVSHSTEQAKVLNVDELTRTIYEGQGGSFKKRRGKRKRKDCGRNMKEASVGESDLLDSADVVSWCKESSTSNCGEVAKSCGVDDQNRNLKKDRVEDMMEILDFIFETKGASAFQRRLDSQKRGRYKKMILQHMDFDTIRSRISSQTIKSSVELFRDLLLLTNNALVFYSKSTREYKTALLLRGIVTKKMRESLKGTSNKATTQATNFPIKLLVHNPHVKPRSVRPGNRKIVAKAVGGKNSASGESHGTKKPSKVDSPSSVESLTMKKKGFGRPKKVGRGAAAGQRPAMPMKGKKRVRTK*

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