SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32010 | AT | Annotation by Michelle Graham. TAIR10: HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780 | SoyBase | E_val: 1.00E-161 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification | SoyBase | N/A | ISS |
| GO:0010030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of seed germination | SoyBase | N/A | ISS |
| GO:0010072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010431 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed maturation | SoyBase | N/A | ISS |
| GO:0010564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0048825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon development | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:2000034 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed maturation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR23336 | Panther | ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. | JGI | ISS | |
| PTHR23336:SF2 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF02362 | PFAM | B3 DNA binding domain | JGI | ISS | |
| PF07496 | PFAM | CW-type Zinc Finger | JGI | ISS | |
| UniRef100_G7ILC5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: B3 domain-containing transcription repressor VAL2 n=1 Tax=Medicago truncatula RepID=G7ILC5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BB5F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BB5F related cluster n=1 Tax=unknown RepID=UPI000233BB5F | SoyBase | E_val: 0 | ISS |
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Glyma15g07350 not represented in the dataset |
Glyma15g07350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g31970 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g067900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g07350.1 sequence type=CDS gene model=Glyma15g07350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCGGCTTCGTCTTCGTCCTCCAAGCTATGCTTCAATTCCGACTGCAAAGAGTTGAAGTCCGAAAGACCTAAGAAAGGGTGGAGACTCCGCAGCGGAGAACTAGCCGAGCTTTGTGATCGATGCGGCTCTGCTTTTGAAGAAGGGAGGTTCTGTGAAATTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCGAAAGCGGATTCATTGTGGGTGTATTGTTTCAAGTCATGCTTTTATGTTGTTGGATCCCGGAGGAATTGAATGTTATGCATGTGCCCGCAAAAGTATTATTTTGCCATCTAACCTGCCTTGGCCACAGTCCTTTCCCCTTCAAAATCGTTTATCGGATAGACTTAGAGACCTATCTGGCAAAGGTTGGAGTCAGCTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTCTGTTCAATTCTGCTTCTTCATCTGACATGATCCCAGAAGTGCCTTCTTTAGTTGAACTATCCAATAGCTTTGACAAAATGTATTGCAATGAAAGGTTACCTGTCTCAGCCTTGGAAAAGAAAAATGAGGACTTGTCTGGAATGTCAGTTAATTGGAACATCAAGCTTGGCTCGCGGGAGATGATGCTTATGAATGGAATGAGGAATGAGGATAAATCAAGTTCATGTTTAAATATGTGTCAACAGCCTTCTTCTCTGAAGGAAGAGTCATCTCCTCAACCATTTGGTTTGCCTGTGCCTAATTCATGCCAAAATGAAAGAAATGGTAAACTTGGGGTAACTGGAAGTCATCCACAACAAACTCCACCTCCAGGAAAGCAATTTAATGGCACTATGCATTTAGCACCTGATTCATCAGGTGAGGCTCAGGTTCGCAATGGGCGGCCTCGAGCAGATGCCCGAGGAAGAAATCAGTTATTGCCACGGTACTGGCCAAGGTGTACAGATCTGGAGCTACAGCAAATTTCTATTGATTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACCTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAGAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGATACTGTAACATTTAGCCGGTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCAAGTGCTGTGCCATCCGATCAGGACAATGAGACCAAGACTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCATTAATCTCTAGAAAAAGAAAGAGCAACATATTGGGCTCAAAGAGTAAACGTCTGAGAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGTCTGCTCCGGCCCCCTCCTAGCCACATTCCAAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAGTGTGGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTTTCAAGTGGCGCAAATTGCCAGCAAGTGCGCTTCTTCCATCAAAATGGACGTGTTCTGATAATTCGTGGGATCCAGAAAGATCTTCTTGTTCAGCTGCGCAAGAGCTGACAGCAGAGCAACTTGAGAATTTGCTACCTCCTTGTAGTTCAGCTGTTCCCAAGAAAATGAAGGCTGCCAAACAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTTGACACCCTTGCAAATCTAGCTATCCTGGGAGAGGGTGAGGCACTCCCAGCATCCGCGCAGGCCACAACTAAGCATCCACGTCACAGACCTGGCTGCTCTTGCATCGTTTGCATTCAACCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTATGCTTAACAGTGAAGCGACGTTTCCGTACCCTTATGTTACGGCGTGAGAAGAAACAATCAGAAAAAGAAGCAGAGACAACTCGTAAAAAGCAACAGCAACAACATCCTCAACCGTTACCTTCATCTGAAATTTTGCTTGATGAAGATTCCTTGCCCTGTAGTAACACAGGTGATAGTAGCCCAAACCAGAACAAAGAGGGTAATGATGGTTCTGATGATGATCCTAACCGAATAAAATCATCAGCTTTGCCATTCAAAGGTCAAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAACTATCTCCTGGTTCAGATTCTGGCGGCATGATGAAGTTGCTCCATGATGCTACTGAGCGGTATCTCAAACAGCAGACTGTGAACTCTGGTACTGGAGATTCATCAGGCAGTCAATCACGGCTGGTAGGAGATGCAATGAGGGAAGATAAACTTAGCAATGGTGTTGCCCATGGCAGTGGTAGTCATAATACTGATAAGGAACATGCCCAATCTTTGTCTATGAATGTGTGA
>Glyma15g07350.1 sequence type=predicted peptide gene model=Glyma15g07350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASASSSSSKLCFNSDCKELKSERPKKGWRLRSGELAELCDRCGSAFEEGRFCEIFHSNASGWRSCETCRKRIHCGCIVSSHAFMLLDPGGIECYACARKSIILPSNLPWPQSFPLQNRLSDRLRDLSGKGWSQLAGSGPVPWKQAPSLFNSASSSDMIPEVPSLVELSNSFDKMYCNERLPVSALEKKNEDLSGMSVNWNIKLGSREMMLMNGMRNEDKSSSCLNMCQQPSSLKEESSPQPFGLPVPNSCQNERNGKLGVTGSHPQQTPPPGKQFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVPSDQDNETKTGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSNILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDSVGEKIQWAQCEDCFKWRKLPASALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPPCSSAVPKKMKAAKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHPQPLPSSEILLDEDSLPCSNTGDSSPNQNKEGNDGSDDDPNRIKSSALPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDATERYLKQQTVNSGTGDSSGSQSRLVGDAMREDKLSNGVAHGSGSHNTDKEHAQSLSMNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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