SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g07290

Feature Type:gene_model
Chromosome:Gm15
Start:5110626
stop:5115736
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g07290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G05020AT Annotation by Michelle Graham. TAIR10: NAD(P)H dehydrogenase B2 | chr4:2572752-2576222 FORWARD LENGTH=582 SoyBaseE_val: 0ISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0031314GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to mitochondrial inner membrane SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0015036GO-mf Annotation by Michelle Graham. GO Molecular Function: disulfide oxidoreductase activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
KOG2495 KOG NADH-dehydrogenase (ubiquinone) JGI ISS
PTHR22915Panther NADH DEHYDROGENASE-RELATED JGI ISS
PTHR22915:SF4Panther NADH DEHYDROGENASE-RELATED JGI ISS
PF00070PFAM Pyridine nucleotide-disulphide oxidoreductase JGI ISS
PF07992PFAM Pyridine nucleotide-disulphide oxidoreductase JGI ISS
UniRef100_I1MEA0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MEA0_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2HTY1UniRef Annotation by Michelle Graham. Most informative UniRef hit: External NADH-ubiquinone oxidoreductase n=1 Tax=Medicago truncatula RepID=Q2HTY1_MEDTR SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g07290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g07290
ParalogEvidenceComments
Glyma13g32030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g07290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g067300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g07290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g07290
>Glyma15g07290.1   sequence type=CDS   gene model=Glyma15g07290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAGTATCACTTTCTTCCAGCATCTCTCTAGAGCTTTCCGTGATAACCAGTCGCATCTTAAGCTTGTACTGCTCTGCACCGCCGTAAGTGGTGGTGGTCTTTGGGCTTATGGTGAGAGTGTTGCCCCAGAAGAGGCAGTTAGCGAGAAGAAGAAGGTGGTGGTGCTGGGAACTGGTTGGGCGGCCACAAGTTTTATGAAGAATTTGAAGAATCCAAAATATGAGGTTCAAGTAGTATCGCCTCGTAACTACTTTGCATTCACTCCTTTGCTGCCTAGCGTTACGTGCGGGACCGTCGAAGCGCGCAGCATTGTTGAGCCAGTTCGCAATATTTTTAAGAAAAAGGTGGACGTACAATTCAGTGAAGCAGAATGTTTCAAGATTGATGCAGAAAATAGGAAAGTTTACTGTCGATCTAGTGTGAACAATAATTTGAATGGGAAAGAAGAATTTGTTGTGGATTATGACTACCTAATAGTTGCGGTGGGTGCTAATGTCAATACATTTAATACTCCAGGAGTGACGGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCTAAAAAAATTAGAAGAACAGTTATTGACTGCTTCGAGAGAGCAAATTTGCCCGATGTAAGTGAAGATGAGAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGTGGACCTACTGGAGTAGAGTTTGCAGCCTCACTTCATGATTTTGTCAATGAGGATTTGCTCCGTTTATATCCTGGGATTAAAGATTTAGTTAAAATTACACTTCTGGAGGCCGGAGATCATATCTTGGGCATGTTTGACAAGAGAATTACTACTTTTGCTGAAGACAAGTTTCGAAGAGACGGGATTGATGTGAAAACAGGATCCATGGTTGTTAAGGTATCCGAGAAAGAAATTTCCACTAAAGAACTGAAAAACGGAGGAGAGATTAAGACAATTCCGTATGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTCATGGCACAAATCGGTCAGGCTAGCAGGCGTGCTCTAGCTACAGACGAGTGGTTGAGAGTTGAAGGGTGCAGCAATGTCTATGCGCTTGGTGACTGTGCCACGATAAACCAGCGGAAAGTCATGGAAGATATCGTGGCGATCTTTAAGAAGGCTGACAAAGAGAGTTCCGGAACACTTACGGTCAAACAATTTCAAGAGGTCATGAAAGATATCTGTGAAAGATACCCTCAGGTTGAGCTATATCTGAAGAATAAACAGATGCACAACATTGCTGATTTATTGAAGGAAGCCAAGGGAGATGATAAAAAAGAATCAATTGAACTGAATATTGAAGAACTCAAAACTGCACTTTCCAAAGTGGATTCTCAAATGAAATTTCTTCCTGCTACAGCACAGGTTGCATCTCAGCAAGGCACTTACCTGGCCAAGTGTTTTAATCGGATGGAAGAGTGTGAAAAAAATCCTGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCACCATCGGTTCAAACCCTTTAGGTACAAGCATTTAGGTCAATTTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGTACTAGAGCGTTAGTAGTTTCAGACTGGACAAGACGTTTTATTTTTGGAAGGGACTCAAGTAGCATCTGA
Predicted protein sequences of Glyma15g07290
>Glyma15g07290.1   sequence type=predicted peptide   gene model=Glyma15g07290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSITFFQHLSRAFRDNQSHLKLVLLCTAVSGGGLWAYGESVAPEEAVSEKKKVVVLGTGWAATSFMKNLKNPKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFKKKVDVQFSEAECFKIDAENRKVYCRSSVNNNLNGKEEFVVDYDYLIVAVGANVNTFNTPGVTENCHFLKEVEDAKKIRRTVIDCFERANLPDVSEDEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLLRLYPGIKDLVKITLLEAGDHILGMFDKRITTFAEDKFRRDGIDVKTGSMVVKVSEKEISTKELKNGGEIKTIPYGMAVWSTGIGTRPFIKDFMAQIGQASRRALATDEWLRVEGCSNVYALGDCATINQRKVMEDIVAIFKKADKESSGTLTVKQFQEVMKDICERYPQVELYLKNKQMHNIADLLKEAKGDDKKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPLRFRGEGHHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSSI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo