Glyma15g07260 - SoyBase

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Report for Sequence Feature Glyma15g07260

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5091408
stop:	5094723
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g07260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21450	AT	Annotation by Michelle Graham. TAIR10: PapD-like superfamily protein \| chr4:11426136-11428125 FORWARD LENGTH=295	SoyBase	E_val: 1.00E-108	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0032880	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
KOG0439	KOG	VAMP-associated protein involved in inositol metabolism	JGI		ISS
PTHR10809	Panther	VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP)	JGI		ISS
PF00635	PFAM	MSP (Major sperm protein) domain	JGI		ISS
UniRef100_I1ME96	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1ME96_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HTV7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Major sperm protein n=1 Tax=Medicago truncatula RepID=Q2HTV7_MEDTR	SoyBase	E_val: 2.00E-124	ISS

Expression Patterns of Glyma15g07260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g07260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g067100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g07260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g07260

Limit To All Plant Sequences

>Glyma15g07260.2   sequence type=transcript   gene model=Glyma15g07260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCACCATGAACACCCCAACTGTGGGACCCGACACTCAACCTTTTTGATAAACCAAAAACAAAACCTTTGTATTTTTCTTTACTATATATTTGTTCCATTCCGTGCGCGGTGAATGGTGATCTTATTGTATTTGAGACTTGAGTTGGAAGTCATGGCGATTGGTAATGAGAATCAGCCACAACAATCTGAAGGCAAAGTGTGGAATTTGTTCAAGCTTCCCTTTCGCCATTCAACTTCAACTCCTCACAATCACAATCAAGTTTCCACCTCCAATTCTGTTTCTTCCTTTGCCAAATCGCTCCTCCCCTCACCACGTCGTCTTAAGCTTGATCCTTCCAACAAGCTCTACTTCCCTTATGAGCCGGGCAAGCAGGGTAGGAGTGCCATCAGGATTAAAAACACCAGCAAATCCAACGTAGCTTTCAAGTTTCAAACAAATGCACCCAAGAGTTGTTTCATGCGCCCTCCTGGGGGCATTCTGGCACCGGGCGAGAGTATAATTGCAACTGTGTTCAAGTTTATAGAACATCCATTGAATAATGAAAAGCCAGAAAAAACTGGACTCAAATTCAAAATCACGAGCTTGAAGGTCAAAGGACCAATTGATTATGTCCCTGAAATGTTTGATGAGCTGAAGGATCAAGTAACAGTGGAGCAGATTTTGCAGGTTGTTTTTCTTGATCCAGAGCGTAACTGTCCTGCTTTGGAAAAACTGAAGCTTCAGCTGGTTGAGGCTGATGCTGCTGTTGAGGCACGTAAGAGAGCCCCAGAAGATGCAGGTCCTAAGATTCTCGGAGAAGGGCTCGTCGTAGATGAATGGGTGAGTATGTTTACTTAGTTTTTTATTGGAAAAGTTTCCTTGTAAATTGTAATATGTCACTTTTTTGACAAATGCTTCACGTCTTCATCTA

Coding sequences of Glyma15g07260

Limit To All Plant Sequences

>Glyma15g07260.1   sequence type=CDS   gene model=Glyma15g07260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATCTTATTGTATTTGAGACTTGAGTTGGAAGTCATGGCGATTGGTAATGAGAATCAGCCACAACAATCTGAAGGCAAAGTGTGGAATTTGTTCAAGCTTCCCTTTCGCCATTCAACTTCAACTCCTCACAATCACAATCAAGTTTCCACCTCCAATTCTGTTTCTTCCTTTGCCAAATCGCTCCTCCCCTCACCACGTCGTCTTAAGCTTGATCCTTCCAACAAGCTCTACTTCCCTTATGAGCCGGGCAAGCAGGGTAGGAGTGCCATCAGGATTAAAAACACCAGCAAATCCAACGTAGCTTTCAAGTTTCAAACAAATGCACCCAAGAGTTGTTTCATGCGCCCTCCTGGGGGCATTCTGGCACCGGGCGAGAGTATAATTGCAACTGTGTTCAAGTTTATAGAACATCCATTGAATAATGAAAAGCCAGAAAAAACTGGACTCAAATTCAAAATCACGAGCTTGAAGGTCAAAGGACCAATTGATTATGTCCCTGAAATGTTTGATGAGCTGAAGGATCAAGTAACAGTGGAGCAGATTTTGCAGGTTGTTTTTCTTGATCCAGAGCGTAACTGTCCTGCTTTGGAAAAACTGAAGCTTCAGCTGGTTGAGGCTGATGCTGCTGTTGAGGCACGTAAGAGAGCCCCAGAAGATGCAGGTCCTAAGATTCTCGGAGAAGGGCTCGTCGTAGATGAATGGAAAGAGAGGAGGGAAAGATACCTGGCCAAACAGCAGGGTGAAGTGGTAGTGGACTCTATATAG

>Glyma15g07260.2   sequence type=CDS   gene model=Glyma15g07260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATCTTATTGTATTTGAGACTTGAGTTGGAAGTCATGGCGATTGGTAATGAGAATCAGCCACAACAATCTGAAGGCAAAGTGTGGAATTTGTTCAAGCTTCCCTTTCGCCATTCAACTTCAACTCCTCACAATCACAATCAAGTTTCCACCTCCAATTCTGTTTCTTCCTTTGCCAAATCGCTCCTCCCCTCACCACGTCGTCTTAAGCTTGATCCTTCCAACAAGCTCTACTTCCCTTATGAGCCGGGCAAGCAGGGTAGGAGTGCCATCAGGATTAAAAACACCAGCAAATCCAACGTAGCTTTCAAGTTTCAAACAAATGCACCCAAGAGTTGTTTCATGCGCCCTCCTGGGGGCATTCTGGCACCGGGCGAGAGTATAATTGCAACTGTGTTCAAGTTTATAGAACATCCATTGAATAATGAAAAGCCAGAAAAAACTGGACTCAAATTCAAAATCACGAGCTTGAAGGTCAAAGGACCAATTGATTATGTCCCTGAAATGTTTGATGAGCTGAAGGATCAAGTAACAGTGGAGCAGATTTTGCAGGTTGTTTTTCTTGATCCAGAGCGTAACTGTCCTGCTTTGGAAAAACTGAAGCTTCAGCTGGTTGAGGCTGATGCTGCTGTTGAGGCACGTAAGAGAGCCCCAGAAGATGCAGGTCCTAAGATTCTCGGAGAAGGGCTCGTCGTAGATGAATGGGTGAGTATGTTTACTTAG

Predicted protein sequences of Glyma15g07260

Limit To All Plant Sequences

>Glyma15g07260.1   sequence type=predicted peptide   gene model=Glyma15g07260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVILLYLRLELEVMAIGNENQPQQSEGKVWNLFKLPFRHSTSTPHNHNQVSTSNSVSSFAKSLLPSPRRLKLDPSNKLYFPYEPGKQGRSAIRIKNTSKSNVAFKFQTNAPKSCFMRPPGGILAPGESIIATVFKFIEHPLNNEKPEKTGLKFKITSLKVKGPIDYVPEMFDELKDQVTVEQILQVVFLDPERNCPALEKLKLQLVEADAAVEARKRAPEDAGPKILGEGLVVDEWKERRERYLAKQQGEVVVDSI*

>Glyma15g07260.2   sequence type=predicted peptide   gene model=Glyma15g07260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVILLYLRLELEVMAIGNENQPQQSEGKVWNLFKLPFRHSTSTPHNHNQVSTSNSVSSFAKSLLPSPRRLKLDPSNKLYFPYEPGKQGRSAIRIKNTSKSNVAFKFQTNAPKSCFMRPPGGILAPGESIIATVFKFIEHPLNNEKPEKTGLKFKITSLKVKGPIDYVPEMFDELKDQVTVEQILQVVFLDPERNCPALEKLKLQLVEADAAVEARKRAPEDAGPKILGEGLVVDEWVSMFT*

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