SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G05090 | AT | Annotation by Michelle Graham. TAIR10: Inositol monophosphatase family protein | chr4:2609244-2611627 FORWARD LENGTH=397 | SoyBase | E_val: 1.00E-171 | ISS |
| GO:0006790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process | SoyBase | N/A | ISS |
| GO:0046854 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0008441 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'(2'),5'-bisphosphate nucleotidase activity | SoyBase | N/A | ISS |
| KOG1528 | KOG | Salt-sensitive 3'-phosphoadenosine-5'-phosphatase HAL2/SAL1 | JGI | ISS | |
| PTHR20854 | Panther | INOSITOL MONOPHOSPHATASE | JGI | ISS | |
| PTHR20854:SF3 | Panther | DIPHOSPHONUCLEOSIDE PHOSPHOHYDROLASE | JGI | ISS | |
| PF00459 | PFAM | Inositol monophosphatase family | JGI | ISS | |
| UniRef100_B9SFC7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Diphosphonucleoside phosphohydrolase, putative n=1 Tax=Ricinus communis RepID=B9SFC7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1ME94 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ME94_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g07240 not represented in the dataset |
Glyma15g07240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g32080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g066900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g07240.1 sequence type=CDS gene model=Glyma15g07240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTCATTTTCATTACCAACCAGGCATCTCCTTGGCACTATTTTGTGTTTCTCCTCTCCTCAACGCTCGACAGTCGACACTGATGGCGATGGATATCCTGCGTTCACCTGTCTCCGCCGTCCGATTATTTAACGGTGGCGCAACTCGTAGTCGTCGCTTCAACGTAAGGGCGACCCTGCCATTTCCGCAGCAAAACGCAAAGCATTACAAAGAGCTTCAAGCCGCTATTGACGTTGTTCAGAGGGCTTGCCGTCTCTGTCTTAATGTCAAATCATCCTTGTTCTCAACTGATGGAAAGGTTCTTGAGAAAAATGACCAGACTCCTGTTACTGTGGCAGATTTTGGAGTTCAAGCACTCATAAGTTTCGAGTTAAATAAGCTGTTCCCTTCTATACCTTTGGTGGCTGAAGAGGACTCTGCTTTCTTGCGAACAAGAAACTTGGCAGGTACTGTGCTTGATGCAGTAACTGATACAGCTAGCTCCACTTGTAAACCATTGACACAAGATGATGTACTCGAAGCAATTGATAGAGGGGGCAAGGATGCTTTCGTATTTGGATCAAAGCCGGCCACATATTGGGTGCTTGACCCAATTGATGGCACACGTGGTTTTCTAAAGGCTGGCAAAGCCTTATATGTGGTTGGTTTGGCTCTTGTGGTTGAAGGAGAGATTGTAATTGGTGTTATGGGCTGCCCTAACTGGAAGGAAGATTTATCTGAGAAATCCTCTGTTGAGATTGAGGAGGGTTGGGATTCTCTTGGTGGATCAGGAACTGTAATGATTGCTCATAAAGGCTGTGGAACATGGATGAAAAGTTTGAATAGCCAACTCAAATCATCTGGTGTATGGACCAGATGTTTTGTTGATGGATCTGACATAATACATAAAGCACGCTTCTGTATTCCAGATAGTCAAACATGGGAATCACTGCCCCTGACTTCTTTATTTAATGCCACAAGCAATGCTGACAATGTAGGGAGCAACCAAATTCTTCTTTTGGGGGCATGTTGTGGAAGTTTATGCAAGTATTTGATGGTGGCCTCTGGTAGAGCATCTATTTTCATTCTCCGAGCAAAAGAGAAGACTATTATAAAGGCATGGGACCATGCTGTTGGCATTATATGTGTTCATGAAGCTGGTGGGAAGGTAACAGACTGGAAAGGCAGCGACATAGATCTTGCAGCGGATCATGTTGGCCGGCGGATTATATTTCCCTCTGGCGGTGTCCTTGTTGCCAACGGCAATTTACATAATAAGATTTTGCAGATTATCAATCAGACTTCAAGAGTTTGA
>Glyma15g07240.1 sequence type=predicted peptide gene model=Glyma15g07240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high IHFHYQPGISLALFCVSPLLNARQSTLMAMDILRSPVSAVRLFNGGATRSRRFNVRATLPFPQQNAKHYKELQAAIDVVQRACRLCLNVKSSLFSTDGKVLEKNDQTPVTVADFGVQALISFELNKLFPSIPLVAEEDSAFLRTRNLAGTVLDAVTDTASSTCKPLTQDDVLEAIDRGGKDAFVFGSKPATYWVLDPIDGTRGFLKAGKALYVVGLALVVEGEIVIGVMGCPNWKEDLSEKSSVEIEEGWDSLGGSGTVMIAHKGCGTWMKSLNSQLKSSGVWTRCFVDGSDIIHKARFCIPDSQTWESLPLTSLFNATSNADNVGSNQILLLGACCGSLCKYLMVASGRASIFILRAKEKTIIKAWDHAVGIICVHEAGGKVTDWKGSDIDLAADHVGRRIIFPSGGVLVANGNLHNKILQIINQTSRV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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