Glyma15g07190 - SoyBase

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Report for Sequence Feature Glyma15g07190

Feature Type:	gene_model
Chromosome:	Gm15
Start:	5035713
stop:	5038800
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g07190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G05120	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr4:2632886-2634824 REVERSE LENGTH=418	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0015858	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleoside transport	SoyBase	N/A	ISS
GO:0015864	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine nucleoside transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005337	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside transmembrane transporter activity	SoyBase	N/A	ISS
KOG1479	KOG	Nucleoside transporter	JGI		ISS
PTHR10332	Panther	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER ENT (SLC29)	JGI		ISS
PTHR10332:SF3	Panther	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 4-RELATED	JGI		ISS
PF01733	PFAM	Nucleoside transporter	JGI		ISS
UniRef100_B9SFD5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleoside transporter, putative n=1 Tax=Ricinus communis RepID=B9SFD5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1ME89	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ME89_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g07190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g07190 not represented in the dataset	Glyma15g07190 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g07190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g066400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g07190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g07190

Limit To All Plant Sequences

>Glyma15g07190.3   sequence type=transcript   gene model=Glyma15g07190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCAAATGTAACATTGGTAGGGATCACTGTTTATTAAAAATCTTGTAGCGAACTTTCTGTTCTTTTCGTACAAAGTTCTAATTGGGTTCAAGAGGCACATCTGGTTTTTTCATTCGTGTATGTTGTTTCTCTTTTCTTCATTTTTTTTTCTTCCAATTCCAAACGGTTGTTAATGTATCATCTCCTTGAGAATGTTTTACTGAACATCGACCAGTCTATTGTTATGATAAATTGCTTCTAACAGCGTACTAGTCATGACTATTTCTAATGAAAATAAAGCACCGAGAAGGTTGGAGGGGAAATTTCAAGCAACGGTGGTGTGTTTCATTCTTGGATTGGGGTCCCTTGTTGCATGGAACAGTATGTTGACAGTAGGAGATTATTACTACAATCTGTTCCCTACATACCATCCTTCCCGTGTACTCACTCTCATTTATCAACCATTTGCACTTGTAACTATGGCAATACTGGCGTATAATGAGTCAAGGATCAACACTAGGAAGCGGAACTTAATTGGCTACACTCTTTTCTCCATTAGTACTTTGCTAGTTCTTGTTTTAGATCTAGCAACATCAGGGAAAGGGGGAATTGGACCTTACATTGGTTTGTGTGCACTTTCTGCTTGTTTTGGAGTCGCAGATGCTCATGTCCAAGGTGGCATGGTTGGAGATTTGTCTTTTATGTGTCCTGAGTTCATCCAGTCCTTCTTTGCTGGTTTGGCTGCCTCAGGAGCTCTAGCTTCTGGTTTGAGACTTCTCACCAAAGTGGGTTTTGAGAAATCTGATCATGGTCTTCGAAAAGGGGCTATGCTATTCTTTGCAATCTCTACACTTTTTGAATTCTTCTGCGTAATTCTCTACGCAATATACTTCCCTAAGTTGTCCATAGTAAAGTATTACCGTTCAAAGGCAGCTTCAGAAGGATCAAAAACTGTGTCAGCTGATCTTGCAGCTGCCGGCATTCACAATGACACCAACCTGCAAGTTGGATTTGATGCTAAACAGCAAGAACGGTTGAGCAATAAACAGCTAATTCTTCAGAACATGGATTATGCAGCTGATTTGTTTCTGATATATGTATTGACACTGTCAATTTTCCCTGGATTCCTGTTTGAAAATACTGGATCTCACCAGCTAGGAACATGGTACCCACTTGTTTTGATTGCAATGTACAACCTATTGGATCTAATATCCAGATATATTCCCCTCATCAAATGCCTGAAGTTGGAATCCAGAAAGGGCTTACTCATTGCAGTGCTTTCTAGATTCCTTTTGGTCCCAGCATTTTACTTCACAGCAAAATATGGTGACCAGGGATGGATGATCCTTCTTGTGTCTTTCTTGGGACTAACCAATGGTTATCTCACTGTTTGTGTATTTACCGTGGCACCCCAAGGTTACAAGGGCCCTGAACAGAATGCATTGGGTAATTTGCTCGTGCTGTTTCTTTTAATCGGCATATTTTCTGGGGTTGCTCTTGATTGGTTGTGGCTCATAGGAAAATCAGGATTCTAAAATGAAACAGTATATGTAAAGACTAAAAATTCAGGCAGCTTCTCTTTGCTTAAGCATGTGTATAAAATAAATAGCCAGTGAGAGATTCATATCTTTGACCCATGTTATAGATAGGGGAGAAAAGCATTGAATATAGCAGTATGTTCTCTTTTATTATTTACTCTTATAATATAGATCATTTAGAATCTCTACTTCAAAAAACAAATAGATTAATATAGAATCTCTAATTTTGAAAGTGAAACTTTCACTTTTTCCTTCATTTTATTTGAATTAGAAATTCTCAGTACTCCATTTCTTTTCTTGAATA

Coding sequences of Glyma15g07190

Limit To All Plant Sequences

>Glyma15g07190.2   sequence type=CDS   gene model=Glyma15g07190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTATTTCTAATGAAAATAAAGCACCGAGAAGGTTGGAGGGGAAATTTCAAGCAACGGTGGTGTGTTTCATTCTTGGATTGGGGTCCCTTGTTGCATGGAACAGTATGTTGACAGTAGGAGATTATTACTACAATCTGTTCCCTACATACCATCCTTCCCGTGTACTCACTCTCATTTATCAACCATTTGCACTTGTAACTATGGCAATACTGGCGTATAATGAGTCAAGGATCAACACTAGGAAGCGGAACTTAATTGGCTACACTCTTTTCTCCATTAGTACTTTGCTAGTTCTTGTTTTAGATCTAGCAACATCAGGGAAAGGGGGAATTGGACCTTACATTGGTTTGTGTGCACTTTCTGCTTGTTTTGGAGTCGCAGATGCTCATGTCCAAGGTGGCATGGTTGGAGATTTGTCTTTTATGTGTCCTGAGTTCATCCAGTCCTTCTTTGCTGGTTTGGCTGCCTCAGGAGCTCTAGCTTCTGGTTTGAGACTTCTCACCAAAGTGGGTTTTGAGAAATCTGATCATGGTCTTCGAAAAGGGGCTATGCTATTCTTTGCAATCTCTACACTTTTTGAATTCTTCTGCGTAATTCTCTACGCAATATACTTCCCTAAGTTGTCCATAGTAAAGTATTACCGTTCAAAGGCAGCTTCAGAAGGATCAAAAACTGTGTCAGCTGATCTTGCAGCTGCCGGCATTCACAATGACACCAACCTGCAAGTTGGATTTGATGCTAAACAGCAAGAACGGTTGAGCAATAAACAGCTAATTCTTCAGAACATGGATTATGCAGCTGATTTGTTTCTGATATATGTATTGACACTGTCAATTTTCCCTGGATTCCTGTTTGAAAATACTGGATCTCACCAGCTAGGAACATGGTACCCACTTGTTTTGATTGCAATGTACAACCTATTGGATCTAATATCCAGATATATTCCCCTCATCAAATGCCTGAAGTTGGAATCCAGAAAGGGCTTACTCATTGCAGTGCTTTCTAGATTCCTTTTGGTCCCAGCATTTTACTTCACAGCAAAATATGGTGACCAGGGATGGATGATCCTTCTTGTGTCTTTCTTGGGACTAACCAATGGTTATCTCACTGTTTGTGTATTTACCGTGGCACCCCAAGGTTACAAGGGCCCTGAACAGAATGCATTGGGTAATTTGCTCGTGCTGTTTCTTTTAATCGGCATATTTTCTGGGGTTGCTCTTGATTGGTTGTGGCTCATAGGAAAATCAGGATTCTAA

>Glyma15g07190.3   sequence type=CDS   gene model=Glyma15g07190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTATTTCTAATGAAAATAAAGCACCGAGAAGGTTGGAGGGGAAATTTCAAGCAACGGTGGTGTGTTTCATTCTTGGATTGGGGTCCCTTGTTGCATGGAACAGTATGTTGACAGTAGGAGATTATTACTACAATCTGTTCCCTACATACCATCCTTCCCGTGTACTCACTCTCATTTATCAACCATTTGCACTTGTAACTATGGCAATACTGGCGTATAATGAGTCAAGGATCAACACTAGGAAGCGGAACTTAATTGGCTACACTCTTTTCTCCATTAGTACTTTGCTAGTTCTTGTTTTAGATCTAGCAACATCAGGGAAAGGGGGAATTGGACCTTACATTGGTTTGTGTGCACTTTCTGCTTGTTTTGGAGTCGCAGATGCTCATGTCCAAGGTGGCATGGTTGGAGATTTGTCTTTTATGTGTCCTGAGTTCATCCAGTCCTTCTTTGCTGGTTTGGCTGCCTCAGGAGCTCTAGCTTCTGGTTTGAGACTTCTCACCAAAGTGGGTTTTGAGAAATCTGATCATGGTCTTCGAAAAGGGGCTATGCTATTCTTTGCAATCTCTACACTTTTTGAATTCTTCTGCGTAATTCTCTACGCAATATACTTCCCTAAGTTGTCCATAGTAAAGTATTACCGTTCAAAGGCAGCTTCAGAAGGATCAAAAACTGTGTCAGCTGATCTTGCAGCTGCCGGCATTCACAATGACACCAACCTGCAAGTTGGATTTGATGCTAAACAGCAAGAACGGTTGAGCAATAAACAGCTAATTCTTCAGAACATGGATTATGCAGCTGATTTGTTTCTGATATATGTATTGACACTGTCAATTTTCCCTGGATTCCTGTTTGAAAATACTGGATCTCACCAGCTAGGAACATGGTACCCACTTGTTTTGATTGCAATGTACAACCTATTGGATCTAATATCCAGATATATTCCCCTCATCAAATGCCTGAAGTTGGAATCCAGAAAGGGCTTACTCATTGCAGTGCTTTCTAGATTCCTTTTGGTCCCAGCATTTTACTTCACAGCAAAATATGGTGACCAGGGATGGATGATCCTTCTTGTGTCTTTCTTGGGACTAACCAATGGTTATCTCACTGTTTGTGTATTTACCGTGGCACCCCAAGGTTACAAGGGCCCTGAACAGAATGCATTGGGTAATTTGCTCGTGCTGTTTCTTTTAATCGGCATATTTTCTGGGGTTGCTCTTGATTGGTTGTGGCTCATAGGAAAATCAGGATTCTAA

Predicted protein sequences of Glyma15g07190

Limit To All Plant Sequences

>Glyma15g07190.2   sequence type=predicted peptide   gene model=Glyma15g07190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTISNENKAPRRLEGKFQATVVCFILGLGSLVAWNSMLTVGDYYYNLFPTYHPSRVLTLIYQPFALVTMAILAYNESRINTRKRNLIGYTLFSISTLLVLVLDLATSGKGGIGPYIGLCALSACFGVADAHVQGGMVGDLSFMCPEFIQSFFAGLAASGALASGLRLLTKVGFEKSDHGLRKGAMLFFAISTLFEFFCVILYAIYFPKLSIVKYYRSKAASEGSKTVSADLAAAGIHNDTNLQVGFDAKQQERLSNKQLILQNMDYAADLFLIYVLTLSIFPGFLFENTGSHQLGTWYPLVLIAMYNLLDLISRYIPLIKCLKLESRKGLLIAVLSRFLLVPAFYFTAKYGDQGWMILLVSFLGLTNGYLTVCVFTVAPQGYKGPEQNALGNLLVLFLLIGIFSGVALDWLWLIGKSGF*

>Glyma15g07190.3   sequence type=predicted peptide   gene model=Glyma15g07190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTISNENKAPRRLEGKFQATVVCFILGLGSLVAWNSMLTVGDYYYNLFPTYHPSRVLTLIYQPFALVTMAILAYNESRINTRKRNLIGYTLFSISTLLVLVLDLATSGKGGIGPYIGLCALSACFGVADAHVQGGMVGDLSFMCPEFIQSFFAGLAASGALASGLRLLTKVGFEKSDHGLRKGAMLFFAISTLFEFFCVILYAIYFPKLSIVKYYRSKAASEGSKTVSADLAAAGIHNDTNLQVGFDAKQQERLSNKQLILQNMDYAADLFLIYVLTLSIFPGFLFENTGSHQLGTWYPLVLIAMYNLLDLISRYIPLIKCLKLESRKGLLIAVLSRFLLVPAFYFTAKYGDQGWMILLVSFLGLTNGYLTVCVFTVAPQGYKGPEQNALGNLLVLFLLIGIFSGVALDWLWLIGKSGF*

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