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Report for Sequence Feature Glyma15g07171
Feature Type: gene_model
Chromosome: Gm15
Start: 5021841
stop: 5024393
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g07171
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G03270 AT
Annotation by Michelle Graham. TAIR10: Cyclin D6;1 | chr4:1432375-1433691 REVERSE LENGTH=302
SoyBase E_val: 9.00E-62 ISS
GO:0000278 GO-bp
Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle
SoyBase N/A ISS
GO:0010440 GO-bp
Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression
SoyBase N/A ISS
GO:0042023 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication
SoyBase N/A ISS
GO:0045736 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity
SoyBase N/A ISS
GO:0051726 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0004693 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG0656
KOG
G1/S-specific cyclin D
JGI ISS
PTHR10177 Panther
CYCLINS
JGI ISS
PTHR10177:SF76 Panther
CYCLIN-D
JGI ISS
PF00134 PFAM
Cyclin, N-terminal domain
JGI ISS
PF02984 PFAM
Cyclin, C-terminal domain
JGI ISS
UniRef100_A8Y919 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: D6-type cyclin n=1 Tax=Populus trichocarpa RepID=A8Y919_POPTR
SoyBase E_val: 3.00E-99 ISS
UniRef100_UPI000233B774 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233B774 related cluster n=1 Tax=unknown RepID=UPI000233B774
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g07171
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g07171
Paralog Evidence Comments
Glyma13g32130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g07171 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g066200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g07171
Transcripts of Glyma15g07171
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g07171.2 sequence type=transcript gene model=Glyma15g07171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CCACAGAAACAAAAGGGAATTACAAGTATATGCAATTTTTCCTAGAATATGTAAGCACGCATGGTAGAATTTAAAATTTTATGAACGTCATGATAGCAGTGGGACATGATGATTCAACCATTTGTATGTGGAGGGTGAAAGTAACGGTGACACTCCTAATGTTAACCAAAACATTGTCACTTCCATCTCAGATCAAACGCACATGCTACATTATTATATTCTCTTTCCTGAATTTCCATACCTGTAGAACTTTTCTTATCTTGGCGAGGTGGTAGAAAATGTAATCCTACTATGTCAAAACTTATTGAACTCTTTAGGCACTTCTCTGTGCTTTTCCTTATTTCTATGTCTATAGATGAGAAAGAGTGAGGAGCAAAGAGTCCATATTCCATAATATGTATTTGTAAATGCTACTACTGCCAATAAAGAAGGCAAACACAATCACTTTATCAACACAGAAAGCCAAGCTTCTCTTTCTTTTCCATCAACACAGTTACCATCTTGAAACTTTTTGTCTCTTTGTCTTTCTCATGCATTGAATTCCTCAATAACAATGCACAGAATGTAGAAAACAGACTAGGTTATCAGGAAAGGGAAGATGGAGTTTGATCTTGAAGACCCACTAGTCAGCTTGGAAGAAGAGCAAACCTTTACTATATCAGAACTCTTTGCCTCCGAATCTGAACACGTGCCTTCACCAAACTGCTTAACTTCAACACATTTTCGCGTTTTCTGTTGTGAAGCTATATCTCTCATTCTTCAGGTTTCTTGCAAATTGGACCCATTTGTAGCTTATCTTGCTATAAATTACTTGCACCGTTTCATGTCAAGCCAAGAAATTCCGCAAGGGAAGCCGTGGTTTCTCAGGCTTGTTGTCATATCATGTCTTTCTCTTGCTTCAAAGATGAAGAACACAACTTTATCATTTTTGGTTATACAAAAAGAAGGTTGCTACTTTAAGGCTCAGAGTATTCAGAGAATGGAACTTCTTATTCTCGGGGCTCTGAAATGGCGTATGAGGTCGATTACACCTTTTTCTTTCCTTCATTTCTTTATCTCTTTAGCTGAAATTAAAGACCAATCACTAAAGCAAGCACTTAAAAGTAGAGCTTCAGAGATAATCTTCAATGCTCAAAATGACATTAAGCTTTTAGAGTATAAACCTTCAACTGTTGCAGCAACTGCCCTTATCTTTGCATCTCATGAACTATTCCCACAGCAATATTCTATTCTGAGAGCTTCAATTACAGCCAGCGAGTACCTAGATGGGGAGACGTTGTCCAAGTGCTTTGACTTGATGCAAGACATGATGAGAATGGAAGCAAAGGAGTTAATGATAGATACAAGCTTTTTAAGCACAGAAACTCCAGTGAGTATGTTGGAGAGAAACACTAAACGACAAAGAATTTAGTGGTTTATATATGTTGCAGAAGAAAAATCCAATTTTCTCAAACTTAAGAAGAAGAAAGCTGAGGGAAAAGGAAAACAATCATGTTTGGTCCATATGTTCTGTGTCACTGTTTCCACTCAGTCCAAAACAAGAGAGGACGCAAGGCCTTGATTTGGAATGAGAGTTGAGATATCCATACACTCCTGAGTGTTGTTCACCATAAAGAAATTATTACTGTAATCTAGTGCATAAAATGAAAATCAGGAGTTATTAAATCAAATGGAAGTTGTAAGGTGGCATGGACCAATGCAATGAAATAAAAAGGCTGATATATATATAGGGGTTAATTTGAATCCGATTGAGCCTTTATTAAGGTCGTGAAGCCAGACATATTTCCACAAAAGGAAATGGTAAAATTTTAATCCCAAGACAATTAGTAAATCAAGCCTTCAATCTCACACAAGATCTATAAACTGTGGTTTAGCGTGAGTGTTACTGTTTTAGGCTTGGCTGTGGCTGTAAACGAATACATGTCACTGAATATATATGTTCCCCTATGTTGCATTGTTACTTGACCGATAGAGAAGCCAAAACATTGTTCGATTTCTAGATGGATGATGGTGTCCATTGCTTTAAGAAAGGAG
Coding sequences of Glyma15g07171
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g07171.1 sequence type=CDS gene model=Glyma15g07171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTTTGATCTTGAAGACCCACTAGTCAGCTTGGAAGAAGAGCAAACCTTTACTATATCAGAACTCTTTGCCTCCGAATCTGAACACGTGCCTTCACCAAACTGCTTAACTTCAACACATTTTCGCGTTTTCTGTTGTGAAGCTATATCTCTCATTCTTCAGGTTCAGGTTTCTTGCAAATTGGACCCATTTGTAGCTTATCTTGCTATAAATTACTTGCACCGTTTCATGTCAAGCCAAGAAATTCCGCAAGGGAAGCCGTGGTTTCTCAGGCTTGTTGTCATATCATGTCTTTCTCTTGCTTCAAAGATGAAGAACACAACTTTATCATTTTTGGTTATACAAAAAGAAGGTTGCTACTTTAAGGCTCAGAGTATTCAGAGAATGGAACTTCTTATTCTCGGGGCTCTGAAATGGCGTATGAGGTCGATTACACCTTTTTCTTTCCTTCATTTCTTTATCTCTTTAGCTGAAATTAAAGACCAATCACTAAAGCAAGCACTTAAAAGTAGAGCTTCAGAGATAATCTTCAATGCTCAAAATGACATTAAGCTTTTAGAGTATAAACCTTCAACTGTTGCAGCAACTGCCCTTATCTTTGCATCTCATGAACTATTCCCACAGCAATATTCTATTCTGAGAGCTTCAATTACAGCCAGCGAGTACCTAGATGGGGAGACGTTGTCCAAGTGCTTTGACTTGATGCAAGACATGATGAGAATGGAAGCAAAGGAGTTAATGATAGATACAAGCTTTTTAAGCACAGAAACTCCAGTGAGTATGTTGGAGAGAAACACTAAACGACAAAGAATTTAG
>Glyma15g07171.2 sequence type=CDS gene model=Glyma15g07171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTTTGATCTTGAAGACCCACTAGTCAGCTTGGAAGAAGAGCAAACCTTTACTATATCAGAACTCTTTGCCTCCGAATCTGAACACGTGCCTTCACCAAACTGCTTAACTTCAACACATTTTCGCGTTTTCTGTTGTGAAGCTATATCTCTCATTCTTCAGGTTTCTTGCAAATTGGACCCATTTGTAGCTTATCTTGCTATAAATTACTTGCACCGTTTCATGTCAAGCCAAGAAATTCCGCAAGGGAAGCCGTGGTTTCTCAGGCTTGTTGTCATATCATGTCTTTCTCTTGCTTCAAAGATGAAGAACACAACTTTATCATTTTTGGTTATACAAAAAGAAGGTTGCTACTTTAAGGCTCAGAGTATTCAGAGAATGGAACTTCTTATTCTCGGGGCTCTGAAATGGCGTATGAGGTCGATTACACCTTTTTCTTTCCTTCATTTCTTTATCTCTTTAGCTGAAATTAAAGACCAATCACTAAAGCAAGCACTTAAAAGTAGAGCTTCAGAGATAATCTTCAATGCTCAAAATGACATTAAGCTTTTAGAGTATAAACCTTCAACTGTTGCAGCAACTGCCCTTATCTTTGCATCTCATGAACTATTCCCACAGCAATATTCTATTCTGAGAGCTTCAATTACAGCCAGCGAGTACCTAGATGGGGAGACGTTGTCCAAGTGCTTTGACTTGATGCAAGACATGATGAGAATGGAAGCAAAGGAGTTAATGATAGATACAAGCTTTTTAAGCACAGAAACTCCAGTGAGTATGTTGGAGAGAAACACTAAACGACAAAGAATTTAG
Predicted protein sequences of Glyma15g07171
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g07171.1 sequence type=predicted peptide gene model=Glyma15g07171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEFDLEDPLVSLEEEQTFTISELFASESEHVPSPNCLTSTHFRVFCCEAISLILQVQVSCKLDPFVAYLAINYLHRFMSSQEIPQGKPWFLRLVVISCLSLASKMKNTTLSFLVIQKEGCYFKAQSIQRMELLILGALKWRMRSITPFSFLHFFISLAEIKDQSLKQALKSRASEIIFNAQNDIKLLEYKPSTVAATALIFASHELFPQQYSILRASITASEYLDGETLSKCFDLMQDMMRMEAKELMIDTSFLSTETPVSMLERNTKRQRI*
>Glyma15g07171.2 sequence type=predicted peptide gene model=Glyma15g07171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEFDLEDPLVSLEEEQTFTISELFASESEHVPSPNCLTSTHFRVFCCEAISLILQVSCKLDPFVAYLAINYLHRFMSSQEIPQGKPWFLRLVVISCLSLASKMKNTTLSFLVIQKEGCYFKAQSIQRMELLILGALKWRMRSITPFSFLHFFISLAEIKDQSLKQALKSRASEIIFNAQNDIKLLEYKPSTVAATALIFASHELFPQQYSILRASITASEYLDGETLSKCFDLMQDMMRMEAKELMIDTSFLSTETPVSMLERNTKRQRI*