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Report for Sequence Feature Glyma15g07110

Feature Type:gene_model
Chromosome:Gm15
Start:4961874
stop:4972154
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g07110
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78955AT Annotation by Michelle Graham. TAIR10: camelliol C synthase 1 | chr1:29689153-29694255 REVERSE LENGTH=769 SoyBaseE_val: 0ISS
GO:0042300GO-mf Annotation by Michelle Graham. GO Molecular Function: beta-amyrin synthase activity SoyBaseN/AISS
GO:0090438GO-mf Annotation by Michelle Graham. GO Molecular Function: camelliol C synthase activity SoyBaseN/AISS
KOG0497 KOG Oxidosqualene-lanosterol cyclase and related proteins JGI ISS
PTHR11764Panther SQUALENE CYCLASES-RELATED JGI ISS
PTHR11764:SF3Panther CYCLOARTENOL SYNTHASE-RELATED JGI ISS
PF00432PFAM Prenyltransferase and squalene oxidase repeat JGI ISS
UniRef100_D7P7W7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-amyrin synthase n=1 Tax=Glycyrrhiza uralensis RepID=D7P7W7_GLYUR SoyBaseE_val: 0ISS
UniRef100_UPI000233B770UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B770 related cluster n=1 Tax=unknown RepID=UPI000233B770 SoyBaseE_val: 0ISS

Proteins Associated with Glyma15g07110
LocusGene SymbolProtein Name
CAMS1 CAMELLIOL C SYNTHASE 1

Expression Patterns of Glyma15g07110
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g07110 not represented in the dataset
Glyma15g07110 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g07110
ParalogEvidenceComments
Glyma13g32200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g07110 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g065600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g07110
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g07110
>Glyma15g07110.2   sequence type=CDS   gene model=Glyma15g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAGGTTAAAGATAGCAGATGGAGGGAATGATCCCTATATATTTAGCACAAATAATTTTGTGGGGAGGCAAACATGGGAGTTTGATTCTGAGGCAGGTACCGCTGAGGAACGAGCTCAAATTGAAGCAGCTCGTCAAAACTTTTATGAAAATCGCTTCATGGTCAAGGCTTGTGGTGATCGACTTTGGCGGTTTCAGATTTTGAGGGAAAATAATTTCAAACAAACAATAAGTGGCGTAAAGATAGAAGATGATGAGAAAATTACATGCGAGAAAATTAGGAGCACCATGAAGAGGGCCACTCATTACCTATCGTCACTACAGACTAGTGATGGTCATTGGCCTGCTCATCTTGGAGGTTCCCTCTTTTTTACTCCACCGTTGGAAGATCTTTACTATCCCCATCATTGGATACAAGATCTATTATGGGATAGTTTGTATGTATTCACCGAGCCTCTTCTAAATTGTTGGCCTTTCAACAAGTTGGTTAGAGAAAAGGCACTTCAAGTAACAATGAAACATATTCATTATGAAGACGAAAATAGTCGGTATATTGCCATCGGGTGTGTGGAAAAGGTTCTATGTATGCTTGCTTGTTGGGTAGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTATTTATGGGTTTCTGAAGATGGAATGACCATGCAGGGTATTGGTACTCAATCATGGGATGCTGGTTTCATTGTTCAAGCTTTACTTGCTACTAACCTTATAGATGATTTTGGACCTACAATTGCAAAAGCTCACGATTTCATCAAGAAATCTCAGGTAAGAGAAAATCCTTCGGGAGATTTTAAGAGTATGTATCGTCACATTTGTAAAGGCTCATGGACCCTTGCCGATAGAGATCATGCATGGCAAGTTTCTGATACCACTGCAGAATGTTTGAAGTGTTGTCTACTTTTATCAGTGCTGCCACAAGATATTGTGGGAGAAAAAATGGAACTTGAAAAGTTACATGATTCAATCAATTTGATACTGTCACTTCAGAGTAAAAATGGAGGTATGACTGCGTGGGAGCCCGCAGGAGCTTATAAATGGTTGGAACTACTCAATCCTACGGAATTTTTTGCTGACATAGTAGTTGAGCACGAATATCTTGAATGCACTGCATCAGCAATTCAGGTTTTAGTGTTGTTCAAAAAGCTTTACCCAGAGCATAGAAAGGAAGAGATAGAGAACTTCATTGCTAAAGCAGTAACATTCATTGAAGATACACAATTAGAGAATGGTTCTTGGTATGGGAATTGGGCAGTTTGTTTCACTTACAGCTCTTGGTTTGCACTTGGAGGTCTAGTTGCTGCTGGCAAGACTTACACAAATTGTGTTACTATTCGTAAAGCTGTGAAATTTCTACTCAAAATACAAAATAAGGACGGTGGGTGGGGAGAGAGTTATCTTTCTTGCCCAAGGAAGATGTACGTACCTCTTGAAGGAAGTCGATCAAATGTTGTACAAACATCATGGGCTCTAATGGCTCTAATTCATGCTGAGCAGGCTGAGAGAGATCCAACTCCCCTTCATCATGCAGCAAAGTTACTCATTAATTCTCAGTTAGAAGATGGCGATTGGCCCCAACAAGAAACTCTTGGAGTATACTTGAGAAATTGCTTGGTTCATTACTCATTCTATAGAAATATTTTTCCAATGTGGGCTTTGGCTGAATACCGCACAAATGTTTTATTGCCTTCCTTTACTATTTAA
Predicted protein sequences of Glyma15g07110
>Glyma15g07110.2   sequence type=predicted peptide   gene model=Glyma15g07110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWRLKIADGGNDPYIFSTNNFVGRQTWEFDSEAGTAEERAQIEAARQNFYENRFMVKACGDRLWRFQILRENNFKQTISGVKIEDDEKITCEKIRSTMKRATHYLSSLQTSDGHWPAHLGGSLFFTPPLEDLYYPHHWIQDLLWDSLYVFTEPLLNCWPFNKLVREKALQVTMKHIHYEDENSRYIAIGCVEKVLCMLACWVEDPNGDAFKKHLARIPDYLWVSEDGMTMQGIGTQSWDAGFIVQALLATNLIDDFGPTIAKAHDFIKKSQVRENPSGDFKSMYRHICKGSWTLADRDHAWQVSDTTAECLKCCLLLSVLPQDIVGEKMELEKLHDSINLILSLQSKNGGMTAWEPAGAYKWLELLNPTEFFADIVVEHEYLECTASAIQVLVLFKKLYPEHRKEEIENFIAKAVTFIEDTQLENGSWYGNWAVCFTYSSWFALGGLVAAGKTYTNCVTIRKAVKFLLKIQNKDGGWGESYLSCPRKMYVPLEGSRSNVVQTSWALMALIHAEQAERDPTPLHHAAKLLINSQLEDGDWPQQETLGVYLRNCLVHYSFYRNIFPMWALAEYRTNVLLPSFTI*






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