Glyma15g07101 - SoyBase

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Report for Sequence Feature Glyma15g07101

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4952115
stop:	4953277
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g07101

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22870	AT	Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family \| chr5:7647056-7647679 REVERSE LENGTH=207	SoyBase	E_val: 1.00E-59	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03168	PFAM	Late embryogenesis abundant protein	JGI		ISS
UniRef100_Q9FFC1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAF18257.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FFC1_ARATH	SoyBase	E_val: 5.00E-57	ISS
UniRef100_UPI000189D74E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D74E related cluster n=1 Tax=unknown RepID=UPI000189D74E	SoyBase	E_val: 6.00E-147	ISS

Expression Patterns of Glyma15g07101

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g07101 not represented in the dataset	Glyma15g07101 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g07101

Paralog	Evidence	Comments
Glyma13g32226	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g07101 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g065400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g07101

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g07101

Limit To All Plant Sequences

>Glyma15g07101.1   sequence type=CDS   gene model=Glyma15g07101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCATCCTCCCTCACAATCGAACTCTACAGCAGCCAATAAGCCAAAACGTTCCAACCTTCTCCATTACATTGCCATGTTTATAGTAGCCTTGATCATCCTTGTAGGCATAGCTGTGATAATAATTTGGCTAGTTTTGAAGCCAAAAAGGTTGGAGTACAGTGTGGAGAATGCTGCAATCCACAACTTCAACTTAACGGATGCAAATCACCTCTATGCCAACTTTGATTTCACCATAAGATCCTACAATCCCAACTCTAGAATCTCCATATACTATGACACTGTGGAGGTGTCAGTGCGTTATGAGGACCAAACTCTAGCCACCAATGCTGTTCAGCCATTCTTCCAGTCACATAAGAATGTGACCAGGCTGCACGTGGCCCTCACGGCGCAATCCGTGGCCCTGTATGAGTCTGTGCCTAAGGACCTTAGGCTTGAGAGATCCTCTGGGGATATTGAGTTGGATGTGTGGGTGAGGGCAAGGATAAGGTTCAAGGTTGGTGCGTGGAAGTCAAGGCATCGTGTTTTGAGGATTTTTTGTTCTCCTGTGTTGGTGCACTTTTCTAAAGGAAAGAGTTTCGAAAGGGCACCTTGTGAAGTAGAACTCTAA

Predicted protein sequences of Glyma15g07101

Limit To All Plant Sequences

>Glyma15g07101.1   sequence type=predicted peptide   gene model=Glyma15g07101   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHPPSQSNSTAANKPKRSNLLHYIAMFIVALIILVGIAVIIIWLVLKPKRLEYSVENAAIHNFNLTDANHLYANFDFTIRSYNPNSRISIYYDTVEVSVRYEDQTLATNAVQPFFQSHKNVTRLHVALTAQSVALYESVPKDLRLERSSGDIELDVWVRARIRFKVGAWKSRHRVLRIFCSPVLVHFSKGKSFERAPCEVEL*

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