Glyma15g07040 - SoyBase

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Report for Sequence Feature Glyma15g07040

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4899121
stop:	4901988
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g07040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27270	AT	Annotation by Michelle Graham. TAIR10: Quinone reductase family protein \| chr4:13661458-13663243 REVERSE LENGTH=205	SoyBase	E_val: 2.00E-125	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0010181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FMN binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG3135	KOG	1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein	JGI		ISS
PF03358	PFAM	NADPH-dependent FMN reductase	JGI		ISS
UniRef100_B9T876	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Minor allergen Alt a, putative n=1 Tax=Ricinus communis RepID=B9T876_RICCO	SoyBase	E_val: 2.00E-127	ISS
UniRef100_UPI000189DABC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189DABC related cluster n=1 Tax=unknown RepID=UPI000189DABC	SoyBase	E_val: 8.00E-143	ISS

Expression Patterns of Glyma15g07040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g07040

Paralog	Evidence	Comments
Glyma13g32300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g07040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g064700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g07040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g07040

Limit To All Plant Sequences

>Glyma15g07040.2   sequence type=transcript   gene model=Glyma15g07040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCAGTAGTAGTGGCTTTAGGTTTTAGACTTTTCGTACAGTATGTGTCTTACTTATGAAGAATTTTCACCACAGAAAGTCAACTGTGAATGTATGTATTATCTCGTCACTTGCTTATGGTATTTAAAGGAATCAAGGTTTTTTGTATTGATGTAAAATAGCTCCCATAATCTCATACTGTTTTGTCGTTTATTCCTTGGAATTTTAGGATTCTGCTTTCTGTCACCAAACCAGAATTGGAACCTGTTGCTTCTTTGCAATTGGACTTGTGTGGAACCCAAGGGAACCAAATTAGATACTAATACGTAAATTGCATAATCCTGAAATCAAATATGTTTAGAAGTGAGAAGGAATTCATAGCTTTTCAGTTCTTACAATTGCAGCCGAGGAGGAGAAATTTTTGCATAGATATGTTGTTATTCTTTATCCTGTTCTCTCCCTTTTATGGTTATGGAAAATAGGGGGAGGAAATTGGGAGTAGATAAGAAGCCTTTTTTGTCCTTTCTTTGAATAACATAAGGCTTGCAGTTGAAATGTTTCGATTGATTCTTGAACTGTATATTCATTATAACTGGGGAGTTGAAATGTTTCGATTGATTCTTTGAATGTTTTGACTCTGAAGTTTGGGGAGAAGAGGGATTTGGGTTTGGCAAGGGCAATTGGTGAATTCCATCCTACATTTTCCCAAAATGAAAAAAGGTAACGGCAATAGTCATGAACAGAAGGGTGCAAGCCCCACCCGTTTTAACTAGTAGAGAGTTTCTAAGCTACCAGCTCCATCAGTTTCTAATAATCTTTTATATTGATCAGTATCATAAGACCAATAATAGTATATCATCTCCTGCTCATGGAGTTATAGTTAATGTCTATTGTATTTCTCTATCGTTAATCTGAATGGAATTTGCATCGCATGTTTAGTTATTATTCTACATATGGACATGTTGAGAAGCTAGCTAGAGAGATAGAAAAAGGGGCTGCTTCGGTGGAGGGAGTAGAAGCAAAACTGTGGCAGGTACCTGAAACCTTGCCTGAAGAGGTCCTTGCTAAGTTGGGAGCACCTCCAAAGAGTGATGCTCCAATTATTACTCCCAATGAGCTTCCTGAGGCTGATGGTTTTTTGTTTGGTTTTCCCACGAGATTTGGTTCTATGGCTGCTCAATTTAAAGCATTTTTCGATGCAACTGGAGGCCTATGGCGTACACAGTCACTAGCAGGAAAGCCTGCAGGCTTCTTCTATAGCACAAGTTCTCAAGGAGGTGGTCAAGAAACTACCCCGTTGACATCTATTACTCAGCTTGTTCACCATGGATTGATCTTTGTCCCCATTGGCTACACATTTGGTGGTGGCATGTTTGAGATGGAAAAGGTGAAAGGTGGCTCCCCATATGGTGCAGGAACTTATGCTGGAGATGGCTCAAGGCAGCCTAGTGAGTTAGAATTGGCTCAAGCTTTTCATCAGGGTAAATACTTTGCCGGCATTGCAAAAAAGCTCAAGGGATCTCAATGATTTTTATCCTCCATATATCTCCCACACCATACTCTTTGTCCAGTTACCATATTTTCAAACAAAATGAGATGTCAGACGCAAAAATAAAATATATAAGTGTGAGAGAATAGAGTAATACTTCATCTACAATACAATTGTTGTCAGCACTTGTCATCGGGGTATTCTGTAACGCAGTTTTTACTGCCAATAACAAGAATTTGGTTATTAATACTGGAAACTAGGTGCTAATAAATTGATCACTATCAGCCATCTAAATATTGTGTGCTTATTGGTAAATTGATTATTTAGATAATTTGGCAATAAATTCTCGTTCCAGTCATATTTCAATGAATAAAGTTGGAGGGAATAGTTTATTAGAATGTAAGAAGTTATACATTCTTCTTTGTTGTTCATGATGACTTATTTATATGATCAGGTGCAGCCGTATAATGTTTTTATATATCTTCTTCCTTGGTCATCCAGAATAAAGCAACG

Coding sequences of Glyma15g07040

Limit To All Plant Sequences

>Glyma15g07040.1   sequence type=CDS   gene model=Glyma15g07040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCAAGGTTTATATTGTTTATTATTCTACATATGGACATGTTGAGAAGCTAGCTAGAGAGATAGAAAAAGGGGCTGCTTCGGTGGAGGGAGTAGAAGCAAAACTGTGGCAGGTACCTGAAACCTTGCCTGAAGAGGTCCTTGCTAAGTTGGGAGCACCTCCAAAGAGTGATGCTCCAATTATTACTCCCAATGAGCTTCCTGAGGCTGATGGTTTTTTGTTTGGTTTTCCCACGAGATTTGGTTCTATGGCTGCTCAATTTAAAGCATTTTTCGATGCAACTGGAGGCCTATGGCGTACACAGTCACTAGCAGGAAAGCCTGCAGGCTTCTTCTATAGCACAAGTTCTCAAGGAGGTGGTCAAGAAACTACCCCGTTGACATCTATTACTCAGCTTGTTCACCATGGATTGATCTTTGTCCCCATTGGCTACACATTTGGTGGTGGCATGTTTGAGATGGAAAAGGTGAAAGGTGGCTCCCCATATGGTGCAGGAACTTATGCTGGAGATGGCTCAAGGCAGCCTAGTGAGTTAGAATTGGCTCAAGCTTTTCATCAGGGTAAATACTTTGCCGGCATTGCAAAAAAGCTCAAGGGATCTCAATGA

>Glyma15g07040.2   sequence type=CDS   gene model=Glyma15g07040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTAGTTATTATTCTACATATGGACATGTTGAGAAGCTAGCTAGAGAGATAGAAAAAGGGGCTGCTTCGGTGGAGGGAGTAGAAGCAAAACTGTGGCAGGTACCTGAAACCTTGCCTGAAGAGGTCCTTGCTAAGTTGGGAGCACCTCCAAAGAGTGATGCTCCAATTATTACTCCCAATGAGCTTCCTGAGGCTGATGGTTTTTTGTTTGGTTTTCCCACGAGATTTGGTTCTATGGCTGCTCAATTTAAAGCATTTTTCGATGCAACTGGAGGCCTATGGCGTACACAGTCACTAGCAGGAAAGCCTGCAGGCTTCTTCTATAGCACAAGTTCTCAAGGAGGTGGTCAAGAAACTACCCCGTTGACATCTATTACTCAGCTTGTTCACCATGGATTGATCTTTGTCCCCATTGGCTACACATTTGGTGGTGGCATGTTTGAGATGGAAAAGGTGAAAGGTGGCTCCCCATATGGTGCAGGAACTTATGCTGGAGATGGCTCAAGGCAGCCTAGTGAGTTAGAATTGGCTCAAGCTTTTCATCAGGGTAAATACTTTGCCGGCATTGCAAAAAAGCTCAAGGGATCTCAATGA

Predicted protein sequences of Glyma15g07040

Limit To All Plant Sequences

>Glyma15g07040.1   sequence type=predicted peptide   gene model=Glyma15g07040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATKVYIVYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDAPIITPNELPEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQSLAGKPAGFFYSTSSQGGGQETTPLTSITQLVHHGLIFVPIGYTFGGGMFEMEKVKGGSPYGAGTYAGDGSRQPSELELAQAFHQGKYFAGIAKKLKGSQ*

>Glyma15g07040.2   sequence type=predicted peptide   gene model=Glyma15g07040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSYYSTYGHVEKLAREIEKGAASVEGVEAKLWQVPETLPEEVLAKLGAPPKSDAPIITPNELPEADGFLFGFPTRFGSMAAQFKAFFDATGGLWRTQSLAGKPAGFFYSTSSQGGGQETTPLTSITQLVHHGLIFVPIGYTFGGGMFEMEKVKGGSPYGAGTYAGDGSRQPSELELAQAFHQGKYFAGIAKKLKGSQ*

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