Glyma15g07010 - SoyBase

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Report for Sequence Feature Glyma15g07010

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4880693
stop:	4884253
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g07010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20640	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr3:7210654-7213199 REVERSE LENGTH=454	SoyBase	E_val: 1.00E-56	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
UniRef100_G7IK44	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH112 n=1 Tax=Medicago truncatula RepID=G7IK44_MEDTR	SoyBase	E_val: 3.00E-171	ISS
UniRef100_I1ME73	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ME73_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g07010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g07010

Paralog	Evidence	Comments
Glyma13g32320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g07010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g064500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g07010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g07010

Limit To All Plant Sequences

>Glyma15g07010.2   sequence type=transcript   gene model=Glyma15g07010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAAATATTTGGAAAAGAGAATTAGAATTGGATTCAAAATTCTCTATTTCTCTTTATTTCATTTGTCAAATCATCCACTTGTAATGTCAACCGCGTTCTGGTAAATCCCCCTAGCCGTACCCTTTCCAACCGTTCCATATATAAAATGTCTCAAACCCCCTAACTTTCTTACATCCCCAATAAACTTATAAGTGCGGAACTGTGTTAGAAGAAGAAGAGCTCAAAGATACTAACAAATCAGCAAATTCAGAAGGAAACACAGATTCTGCAGATAAAACATATAGCTAGCATCAATAAGTCTTGCTTGCCATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTATTAATCCAACAAGAAGTGTGTTTCCTCTTATGCCATCAACTTGTTCTGTGGCAGCAGCTGATGCAGGAAACTACAGCACTTGGCAAAGTACTACTGATTTCGTGGATTTGAAGGGAACAAGGTCTTGTGCTGAGGAGACTGATATTAACTTGGTTTCTTCTGATACTTCTCTGAGTTTTCTTGATGCCGAGAAGCCACACCAGAGCGGAACTGGTAGCATCTTGATCGATTCCACCTTACAAATGATGGGTTTTGGCATGTCATCTTCAACTTCACCGAATTGGAGTCAATCTTTATTAGGGAGCAGTTTTGATTCTGTGCTTCAAGAAGAAACAGGCATAGGTGGTGGTGGTTCTTCCAATGATTCACAAATCCAAAAGGATTGGAGTCCAAAGAATTTCTCATCTGATGGTGGCAGCGAGCAAGTTTCCACCGTTGATGCTTTCAAGCCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCTGTTGTTACAAGCACTGATGGATCATTATCTGGTGGTAATTTCCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACATTGATACAAAGCTTATATGAGCATCAACCACAACCACAGAATTCACTTTTCACCAACCCCTCCATGTCCTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAGTCTCTTCCTTTCTCAAACCCTCAATGCCAAAGCAACAGCTCCGTGGATTGCACTTTTCCAACAACACTACTCCTTTCTGGAATTCTTCAGCCGAAGCGCTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAGGCCCAATATCAAACTCCAAAATTTGAAGAGAAACCCAACTGCCCCCATACTCTATTAAAGAAGCTCAAGAGAGAAGAATCACCAGACGCAGCGAAGAAAAATTCTCCTGAGCCTGCCGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACGGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTATTGAGGACTCCATATATGAAAAACAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGACTCAGAAGGGCCAAAGCAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCGGTTTCAAGCACATTCCCGGTCGCTAATGAGACCATTGTTGACTTCTGGACGCCTACATTTGGAGGCGCACTCATTGGCAAGTAGAGACAAGTGGAGAACTCGTGACCATAATAACTATATATTTATATATATATGTGTAAACTAAAAGGAAGAAGAAGAAGAAGGCACGATTGGCAAAGAGAAAATTAAATTAAAGCTGAAGAGAACAAAAGAGAAAAAAAGAAAGAAAGAAAAGGAAGAGACTCTTCAAAGAGAACACGTAAAGCAGAATGATGTACGCTAGTAAATGATTAGTGACTTCTTGAAGAGAATATAATAGATTAGCTTTAGGACCCTTTAAGATTAATAGTGTTTTAAATATTAACGTCGATGAGTGGCAGGAACAAGTGCTAAATTCAGAGGCATTTGACATATTAGATTATAGACTTTTTGTTGCTGTTGTTGTTAGAGAGTCAGTAATATATGCCTGAATTTAGCAGATGGGGTAGCTAGCTAAAACGCCTTTTGTTCCTGCTATAATCGATGTATTATTGTATTATATATTTTGAATCATTAAAGAGGTTTTACACCAACTTTAATTTTATTATTTATATGAAAATAAAAAAATAAACAAAATAAAGCGGATTATATTGTACCGTTC

Coding sequences of Glyma15g07010

Limit To All Plant Sequences

>Glyma15g07010.1   sequence type=CDS   gene model=Glyma15g07010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTATTAATCCAACAAGAAGTGTGTTTCCTCTTATGCCATCAACTTGTTCTGTGGCAGCAGCTGATGCAGGAAACTACAGCACTTGGCAAAGTACTACTGATTTCGTGGATTTGAAGGGAACAAGGTCTTGTGCTGAGGAGACTGATATTAACTTGGTTTCTTCTGATACTTCTCTGAGTTTTCTTGATGCCGAGAAGCCACACCAGAGCGGAACTGGTAGCATCTTGATCGATTCCACCTTACAAATGATGGGTTTTGGCATGTCATCTTCAACTTCACCGAATTGGAGTCAATCTTTATTAGGGAGCAGTTTTGATTCTGTGCTTCAAGAAGAAACAGGCATAGGTGGTGGTGGTTCTTCCAATGATTCACAAATCCAAAAGGATTGGAGTCCAAAGAATTTCTCATCTGATGGTGGCAGCGAGCAAGTTTCCACCGTTGATGCTTTCAAGCCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCTGTTGTTACAAGCACTGATGGATCATTATCTGGTGGTAATTTCCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACATTGATACAAAGCTTATATGAGCATCAACCACAACCACAGAATTCACTTTTCACCAACCCCTCCATGTCCTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAGTCTCTTCCTTTCTCAAACCCTCAATGCCAAAGCAACAGCTCCGTGGATTGCACTTTTCCAACAACACTACTCCTTTCTGGAATTCTTCAGCCGAAGCGCTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAGGCCCAATATCAAACTCCAAAATTTGAAGAGAAACCCAACTGCCCCCATACTCTATTAAAGAAGCTCAAGAGAGAAGAATCACCAGACGCAGCGAAGAAAAATTCTCCTGAGCCTGCCGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACGGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTATTGAGGACTCCATATATGAAAAACAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGACTCAGAAGGGCCAAAGCAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCGGTTTCAAGCACATTCCCGGTCGCTAATGAGACCATTGTTGACTTCTGGACGCCTACATTTGGAGGCGCACTCATTGGCAAGTAG

>Glyma15g07010.2   sequence type=CDS   gene model=Glyma15g07010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTATTAATCCAACAAGAAGTGTGTTTCCTCTTATGCCATCAACTTGTTCTGTGGCAGCAGCTGATGCAGGAAACTACAGCACTTGGCAAAGTACTACTGATTTCGTGGATTTGAAGGGAACAAGGTCTTGTGCTGAGGAGACTGATATTAACTTGGTTTCTTCTGATACTTCTCTGAGTTTTCTTGATGCCGAGAAGCCACACCAGAGCGGAACTGGTAGCATCTTGATCGATTCCACCTTACAAATGATGGGTTTTGGCATGTCATCTTCAACTTCACCGAATTGGAGTCAATCTTTATTAGGGAGCAGTTTTGATTCTGTGCTTCAAGAAGAAACAGGCATAGGTGGTGGTGGTTCTTCCAATGATTCACAAATCCAAAAGGATTGGAGTCCAAAGAATTTCTCATCTGATGGTGGCAGCGAGCAAGTTTCCACCGTTGATGCTTTCAAGCCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCTGTTGTTACAAGCACTGATGGATCATTATCTGGTGGTAATTTCCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACATTGATACAAAGCTTATATGAGCATCAACCACAACCACAGAATTCACTTTTCACCAACCCCTCCATGTCCTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAGTCTCTTCCTTTCTCAAACCCTCAATGCCAAAGCAACAGCTCCGTGGATTGCACTTTTCCAACAACACTACTCCTTTCTGGAATTCTTCAGCCGAAGCGCTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAGGCCCAATATCAAACTCCAAAATTTGAAGAGAAACCCAACTGCCCCCATACTCTATTAAAGAAGCTCAAGAGAGAAGAATCACCAGACGCAGCGAAGAAAAATTCTCCTGAGCCTGCCGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACGGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTATTGAGGACTCCATATATGAAAAACAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGACTCAGAAGGGCCAAAGCAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCGGTTTCAAGCACATTCCCGGTCGCTAATGAGACCATTGTTGACTTCTGGACGCCTACATTTGGAGGCGCACTCATTGGCAAGTAG

Predicted protein sequences of Glyma15g07010

Limit To All Plant Sequences

>Glyma15g07010.1   sequence type=predicted peptide   gene model=Glyma15g07010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEFQAAICGESWWNIINPTRSVFPLMPSTCSVAAADAGNYSTWQSTTDFVDLKGTRSCAEETDINLVSSDTSLSFLDAEKPHQSGTGSILIDSTLQMMGFGMSSSTSPNWSQSLLGSSFDSVLQEETGIGGGGSSNDSQIQKDWSPKNFSSDGGSEQVSTVDAFKPMNQEFSLDQQSLNSVVTSTDGSLSGGNFPVVSASYGYPSTLIQSLYEHQPQPQNSLFTNPSMSYGTCSNELSPTWSKVSSFLKPSMPKQQLRGLHFSNNTTPFWNSSAEALNDIRAGVFASSQAQYQTPKFEEKPNCPHTLLKKLKREESPDAAKKNSPEPAAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVLRTPYMKNNGAPIQHQQDCDNLKDSEGPKQDLRSRGLCLVPVSSTFPVANETIVDFWTPTFGGALIGK*

>Glyma15g07010.2   sequence type=predicted peptide   gene model=Glyma15g07010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEFQAAICGESWWNIINPTRSVFPLMPSTCSVAAADAGNYSTWQSTTDFVDLKGTRSCAEETDINLVSSDTSLSFLDAEKPHQSGTGSILIDSTLQMMGFGMSSSTSPNWSQSLLGSSFDSVLQEETGIGGGGSSNDSQIQKDWSPKNFSSDGGSEQVSTVDAFKPMNQEFSLDQQSLNSVVTSTDGSLSGGNFPVVSASYGYPSTLIQSLYEHQPQPQNSLFTNPSMSYGTCSNELSPTWSKVSSFLKPSMPKQQLRGLHFSNNTTPFWNSSAEALNDIRAGVFASSQAQYQTPKFEEKPNCPHTLLKKLKREESPDAAKKNSPEPAAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLRTPYMKNNGAPIQHQQDCDNLKDSEGPKQDLRSRGLCLVPVSSTFPVANETIVDFWTPTFGGALIGK*

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