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Report for Sequence Feature Glyma15g06830

Feature Type:gene_model
Chromosome:Gm15
Start:4797996
stop:4798752
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g06830
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G19690AT Annotation by Michelle Graham. TAIR10: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr3:6842365-6842850 REVERSE LENGTH=161 SoyBaseE_val: 1.00E-61ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10334Panther CYSTEINE-RICH SECRETORY PROTEIN (CRISP/SCP/TPX1)-RELATED JGI ISS
PF00188PFAM Cysteine-rich secretory protein family JGI ISS
UniRef100_I1ME56UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1ME56_SOYBN SoyBaseE_val: 4.00E-125ISS
UniRef100_Q9XFB4UniRef Annotation by Michelle Graham. Most informative UniRef hit: PR1a n=1 Tax=Glycine max RepID=Q9XFB4_SOYBN SoyBaseE_val: 1.00E-113ISS

Expression Patterns of Glyma15g06830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g06830
ParalogEvidenceComments
Glyma13g32500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g06830 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g062800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g06830
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g06830
>Glyma15g06830.1   sequence type=CDS   gene model=Glyma15g06830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATACTTGTGCATTAAGGTTTCGTTTTGTGTGATGTGTGTGTTGGGGTTGGTGATTGTGGGTGATGTTGCCTATGCTCAAGATTCAGCTCAAGACTATGTAAATGCACACAATGCTGCACGAGCAGAGGTGAGTTCTCAATCACCAAGAGCAAATGTAATTGTTCCAAGTTTGGCTTGGGATGATACGGTTGCTGCTTATGCAGAGAGCTATGCTAATCAACGTAAAGGTGACTGTGCACTGATCCACTCTGGTGGAAAATATGGGGAGAATATTGCAATGAGCACTGGTGAACTAAGTGGCACAGATGCAGTGAAAATGTGGGTTGATGAGAAAGCCAACTATGACTACAATTCCAATTCCTGTGTTGGCGGAGAGTGCCTGCACTACACTCAGGTTGTTTGGGCCCACTCTCTGCGTCTTGGATGTGCCAAAGTGACATGTGATAATGGAGGCACTTTCATCACTTGCAACTATGATCCCCCTGGCAACTTGGTTGGTGAAAGTCCCTACGAACTGTAG
Predicted protein sequences of Glyma15g06830
>Glyma15g06830.1   sequence type=predicted peptide   gene model=Glyma15g06830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGYLCIKVSFCVMCVLGLVIVGDVAYAQDSAQDYVNAHNAARAEVSSQSPRANVIVPSLAWDDTVAAYAESYANQRKGDCALIHSGGKYGENIAMSTGELSGTDAVKMWVDEKANYDYNSNSCVGGECLHYTQVVWAHSLRLGCAKVTCDNGGTFITCNYDPPGNLVGESPYEL*






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