Glyma15g06650 - SoyBase

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Report for Sequence Feature Glyma15g06650

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4692148
stop:	4695541
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g06650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21860	AT	Annotation by Michelle Graham. TAIR10: methionine sulfoxide reductase B 2 \| chr4:11600238-11601507 REVERSE LENGTH=202	SoyBase	E_val: 5.00E-81	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0008113	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptide-methionine (S)-S-oxide reductase activity	SoyBase	N/A	ISS
GO:0033743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptide-methionine (R)-S-oxide reductase activity	SoyBase	N/A	ISS
KOG0856	KOG	Predicted pilin-like transcription factor	JGI		ISS
PTHR10173	Panther	METHIONINE SULFOXIDE REDUCTASE	JGI		ISS
PTHR10173:SF0	Panther	PEPTIDE METHIONINE SULFOXIDE REDUCTASE	JGI		ISS
PF01641	PFAM	SelR domain	JGI		ISS
UniRef100_G7JU02	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methionine-R-sulfoxide reductase B1 protein n=2 Tax=Medicago truncatula RepID=G7JU02_MEDTR	SoyBase	E_val: 3.00E-95	ISS
UniRef100_I1ME37	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1ME37_SOYBN	SoyBase	E_val: 2.33E-156	ISS

Expression Patterns of Glyma15g06650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g06650

Paralog	Evidence	Comments
Glyma13g32680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g06650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g061100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g06650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g06650

Limit To All Plant Sequences

>Glyma15g06650.2   sequence type=transcript   gene model=Glyma15g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAACATCCAATTGGGAATAATAAAAAGAAAAATGTGAATAAAGAGTGATAATGTAAAAGGTGAGGGTGACCCGTGATTCGTGAACACAAACACCATCGCCATGGGCTTCAATATTCTGAGAACCACTTCCATCTCCACTCCTATCTCTTCCTCCAAATCCAAACCCATTTTCTCAACTCTTCTTCGTTCTTCTCCTTCCACCATTTTCCCCCCAAAGTCCGTTACTCCCACCACTCTTTTCGTTTCTGCCACCCCCTTCTTCACTCTCCATCCCAAGCTTGGTTTTCGTGGTGGGATTGTGGCCATGGCCGCACCTGGCTCTCTCCGCAAATCCGAGGAAGAGTGGCGCGCAATTCTCTCCCCTGAACAGTTTCGGATCCTCAGGCAAAAGGGCACCGAGTTCCCTGGAACAGGAGAGTATGACAAGTTCTATGAAGAGGGAGTTTACAACTGTGCTGGTTGTGGGACTCCACTCTACAGGTCCATAACAAAATTCAATTCTGGTTGTGGCTGGCCAGCCTTCTATGAGGGGATTCCCGGAGCCATAAATCGCAATTGTCATGTACCAACAGCCGGATCCTGATGGGATGAGGACAGAAATAACGTGTGCTGCTTGTGGGGGACATCTAGGTCACGTCTTTAAAGGAGAAGGATTTCCAACACCCACTAACGAACGCCATTGTGTCAATAGCATTTCGCTGAAATTTGCGCCAGCCAATTCTTATTCTTAATAAAATTGAGTCTGCAGTTTGGACGTGACTACTTAAGTACCCAACATCGGTAAAAAAATTATGCAATGTACTTATATTATGAATGAAGTTAAAAAAAAAATGATGGCTAAATAACAATGTTGATAATTTGTACCTTTATTCCTCTGTTCCCTTTTTCACTTGGTGCTAGATCTACTATGTTCATTTGTGCTTGTGTTCGTACTTGGGTTTATATATGTGATATGTCCAAGTAGATTAAAGGTGATAATGATATTGTGAATACTGAATACGCTCATGAAAATGGAAGTGCCATGACTACCTGCTTC

Coding sequences of Glyma15g06650

Limit To All Plant Sequences

>Glyma15g06650.1   sequence type=CDS   gene model=Glyma15g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTTCAATATTCTGAGAACCACTTCCATCTCCACTCCTATCTCTTCCTCCAAATCCAAACCCATTTTCTCAACTCTTCTTCGTTCTTCTCCTTCCACCATTTTCCCCCCAAAGTCCGTTACTCCCACCACTCTTTTCGTTTCTGCCACCCCCTTCTTCACTCTCCATCCCAAGCTTGGTTTTCGTGGTGGGATTGTGGCCATGGCCGCACCTGGCTCTCTCCGCAAATCCGAGGAAGAGTGGCGCGCAATTCTCTCCCCTGAACAGTTTCGGATCCTCAGGCAAAAGGGCACCGAGTTCCCTGGAACAGGAGAGTATGACAAGTTCTATGAAGAGGGAGTTTACAACTGTGCTGGTTGTGGGACTCCACTCTACAGGTCCATAACAAAATTCAATTCTGGTTGTGGCTGGCCAGCCTTCTATGAGGGGATTCCCGGAGCCATAAATCGCAATCCGGATCCTGATGGGATGAGGACAGAAATAACGTGTGCTGCTTGTGGGGGACATCTAGGTCACGTCTTTAAAGGAGAAGGATTTCCAACACCCACTAACGAACGCCATTGTGTCAATAGCATTTCGCTGAAATTTGCGCCAGCCAATTCTTATTCTTAA

>Glyma15g06650.2   sequence type=CDS   gene model=Glyma15g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTTCAATATTCTGAGAACCACTTCCATCTCCACTCCTATCTCTTCCTCCAAATCCAAACCCATTTTCTCAACTCTTCTTCGTTCTTCTCCTTCCACCATTTTCCCCCCAAAGTCCGTTACTCCCACCACTCTTTTCGTTTCTGCCACCCCCTTCTTCACTCTCCATCCCAAGCTTGGTTTTCGTGGTGGGATTGTGGCCATGGCCGCACCTGGCTCTCTCCGCAAATCCGAGGAAGAGTGGCGCGCAATTCTCTCCCCTGAACAGTTTCGGATCCTCAGGCAAAAGGGCACCGAGTTCCCTGGAACAGGAGAGTATGACAAGTTCTATGAAGAGGGAGTTTACAACTGTGCTGGTTGTGGGACTCCACTCTACAGGTCCATAACAAAATTCAATTCTGGTTGTGGCTGGCCAGCCTTCTATGAGGGGATTCCCGGAGCCATAAATCGCAATTGTCATGTACCAACAGCCGGATCCTGA

Predicted protein sequences of Glyma15g06650

Limit To All Plant Sequences

>Glyma15g06650.1   sequence type=predicted peptide   gene model=Glyma15g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFNILRTTSISTPISSSKSKPIFSTLLRSSPSTIFPPKSVTPTTLFVSATPFFTLHPKLGFRGGIVAMAAPGSLRKSEEEWRAILSPEQFRILRQKGTEFPGTGEYDKFYEEGVYNCAGCGTPLYRSITKFNSGCGWPAFYEGIPGAINRNPDPDGMRTEITCAACGGHLGHVFKGEGFPTPTNERHCVNSISLKFAPANSYS*

>Glyma15g06650.2   sequence type=predicted peptide   gene model=Glyma15g06650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFNILRTTSISTPISSSKSKPIFSTLLRSSPSTIFPPKSVTPTTLFVSATPFFTLHPKLGFRGGIVAMAAPGSLRKSEEEWRAILSPEQFRILRQKGTEFPGTGEYDKFYEEGVYNCAGCGTPLYRSITKFNSGCGWPAFYEGIPGAINRNCHVPTAGS*

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