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Report for Sequence Feature Glyma15g06491

Feature Type:gene_model
Chromosome:Gm15
Start:4579327
stop:4585730
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g06491
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37940AT Annotation by Michelle Graham. TAIR10: AGAMOUS-like 21 | chr4:17835695-17838621 REVERSE LENGTH=228 SoyBaseE_val: 2.00E-53ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009556GO-bp Annotation by Michelle Graham. GO Biological Process: microsporogenesis SoyBaseN/AISS
GO:0009691GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin biosynthetic process SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0052543GO-bp Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008134GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription factor binding SoyBaseN/AISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PTHR11945:SF96Panther AGL21 (AGAMOUS-LIKE 21), TRANSCRIPTION FACTOR JGI ISS
PF01486PFAM K-box region JGI ISS
UniRef100_G7IS85UniRef Annotation by Michelle Graham. Most informative UniRef hit: MADS-box protein AGL16-II n=1 Tax=Medicago truncatula RepID=G7IS85_MEDTR SoyBaseE_val: 1.00E-84ISS
UniRef100_I1M2L0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1M2L0_SOYBN SoyBaseE_val: 4.00E-116ISS

Expression Patterns of Glyma15g06491
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g06491 not represented in the dataset
Glyma15g06491 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g06491
ParalogEvidenceComments
Glyma13g32810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g06491 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g059600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g06491
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g06491
>Glyma15g06491.2   sequence type=transcript   gene model=Glyma15g06491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCTCAAACCATCATATTACAGACACTTGTTATCATATATTAAACTGTGTAACGCATTGATCTACATCTTTTATTTACTTACAAAAAAATATGCTAACGTGCTCTTGTAATGACTTCCTACATTATGACAGCATGAAATCTGTGATTGAACGCTACAACAAGCTAAAAGAGGAACACCATCACCTCATGAATCCGGCTTCAGAAGCGAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAACAGCTTCAGTACTTGCAGGAATGCCACAGGCAATTAATGGGGGAAGAACTTATGGGTTTGGGTATTAAAGAACTACAAAGTCTGGAAAACCAACTGGAGATGAGTTTAAAGGGTGTCCGCATGAAAAAGGACCAAATTTTAACTAATGAGATCGAAGAACTACGCCAAAAGGGAAATCTCATTCATCAAGAAAATGTTGAACTCTATCAAAAGATGGAGCAGATCCAAAAAGAAAATGCAGAGCTACAGAAGAAGGTTTATGAAGCAAGGAGTACAAATGAAGAAAATGTGGCATCCAATCCTTCTTATAAGGTCAGAAATGGATATGATTTACATGCACCTATTAGTCTCCAACTAAGTCAGCCACAGCCTCAATACAGTGAACCATCAGCCAAAGCAATAAAACTCGGATTGCAGCTGCATTAGCAAAAACTGTTCAGTAATCGGGGAGGTTGTCATTTTGTACCAAGCAGCCAACAAAGCAACAACTTCTCCCTAGAATGATCAGACTTCTTTGAGTTGGATCTTGTAGTTCATCAACCACATTTGTTCCATTCAACAGTACAACATATGTATGGTACGAGATTATCTACCAAGAAGCATACAATTGCTGTTAAGGATCAGACATAATGTTTACCTTTGTAAATTTTGTGCAATAAAAACATAACACAATTGAGTCTGGTGTTGTTTTATATAAATTCTAAATACATATGTTGTGATC

>Glyma15g06491.3   sequence type=transcript   gene model=Glyma15g06491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCTCAAACCATCATATTACAGACACTTGTTATCATATATTAAACTGTGTAACGCATTGATCTACATCTTTTATTTACTTACAAAAAAATATGCTAACGTGCTCTTGTAATGACTTCCTACATTATGACAGCATGAAATCTGTGATTGAACGCTACAACAAGCTAAAAGAGGAACACCATCACCTCATGAATCCGGCTTCAGAAGCGAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAACAGCTTCAGTACTTGCAGGAATGCCACAGGCAATTAATGGGGGAAGAACTTATGGGTTTGGGTATTAAAGAACTACAAAGTCTGGAAAACCAACTGGAGATGAGTTTAAAGGGTGTCCGCATGAAAAAGGACCAAATTTTAACTAATGAGATCGAAGAACTACGCCAAAAGGTTTAAGGTGTATGGTTTTGTTCTTGCCGAGATTGACCAAGGTTTTTCCAAAAATTCTGACCAATTTTGATTTATGCCATCGTAGGGAAATCTCATTCATCAAGAAAATGTTGAACTCTATCAAAAGATGGAGCAGATCCAAAAAGAAAATGCAGAGCTACAGAAGAAG
Coding sequences of Glyma15g06491
>Glyma15g06491.1   sequence type=CDS   gene model=Glyma15g06491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAACGTGCTCTTGTAATGACTTCCTACATTATGACAGCATGAAATCTGTGATTGAACGCTACAACAAGCTAAAAGAGGAACACCATCACCTCATGAATCCGGCTTCAGAAGCGAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAACAGCTTCAGTACTTGCAGGAATGCCACAGGCAATTAATGGGGGAAGAACTTATGGGTTTGGGTATTAAAGAACTACAAAGTCTGGAAAACCAACTGGAGATGAGTTTAAAGGGTGTCCGCATGAAAAAGGACCAAATTTTAACTAATGAGATCGAAGAACTACGCCAAAAGGGAAATCTCATTCATCAAGAAAATGTTGAACTCTATCAAAAGATGGAGCAGATCCAAAAAGAAAATGCAGAGCTACAGAAGAAGGTTTATGAAGCAAGGAGTACAAATGAAGAAAATGTGGCATCCAATCCTTCTTATAAGGTCAGAAATGGATATGATTTACATGCACCTATTAGTCTCCAACTAAGTCAGCCACAGCCTCAATACAGTGAACCATCAGCCAAAGCAATAAAACTCGGGTATCCACTCAAACTGATATATCAAGTCTATAATTTTTCTTTTTAA

>Glyma15g06491.2   sequence type=CDS   gene model=Glyma15g06491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAACGTGCTCTTGTAATGACTTCCTACATTATGACAGCATGAAATCTGTGATTGAACGCTACAACAAGCTAAAAGAGGAACACCATCACCTCATGAATCCGGCTTCAGAAGCGAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAACAGCTTCAGTACTTGCAGGAATGCCACAGGCAATTAATGGGGGAAGAACTTATGGGTTTGGGTATTAAAGAACTACAAAGTCTGGAAAACCAACTGGAGATGAGTTTAAAGGGTGTCCGCATGAAAAAGGACCAAATTTTAACTAATGAGATCGAAGAACTACGCCAAAAGGGAAATCTCATTCATCAAGAAAATGTTGAACTCTATCAAAAGATGGAGCAGATCCAAAAAGAAAATGCAGAGCTACAGAAGAAGGTTTATGAAGCAAGGAGTACAAATGAAGAAAATGTGGCATCCAATCCTTCTTATAAGGTCAGAAATGGATATGATTTACATGCACCTATTAGTCTCCAACTAAGTCAGCCACAGCCTCAATACAGTGAACCATCAGCCAAAGCAATAAAACTCGGATTGCAGCTGCATTAG

>Glyma15g06491.3   sequence type=CDS   gene model=Glyma15g06491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAACGTGCTCTTGTAATGACTTCCTACATTATGACAGCATGAAATCTGTGATTGAACGCTACAACAAGCTAAAAGAGGAACACCATCACCTCATGAATCCGGCTTCAGAAGCGAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAACAGCTTCAGTACTTGCAGGAATGCCACAGGCAATTAATGGGGGAAGAACTTATGGGTTTGGGTATTAAAGAACTACAAAGTCTGGAAAACCAACTGGAGATGAGTTTAAAGGGTGTCCGCATGAAAAAGGACCAAATTTTAACTAATGAGATCGAAGAACTACGCCAAAAGGTTTAA
Predicted protein sequences of Glyma15g06491
>Glyma15g06491.1   sequence type=predicted peptide   gene model=Glyma15g06491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTCSCNDFLHYDSMKSVIERYNKLKEEHHHLMNPASEAKFWQTEAASLRQQLQYLQECHRQLMGEELMGLGIKELQSLENQLEMSLKGVRMKKDQILTNEIEELRQKGNLIHQENVELYQKMEQIQKENAELQKKVYEARSTNEENVASNPSYKVRNGYDLHAPISLQLSQPQPQYSEPSAKAIKLGYPLKLIYQVYNFSF*

>Glyma15g06491.2   sequence type=predicted peptide   gene model=Glyma15g06491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTCSCNDFLHYDSMKSVIERYNKLKEEHHHLMNPASEAKFWQTEAASLRQQLQYLQECHRQLMGEELMGLGIKELQSLENQLEMSLKGVRMKKDQILTNEIEELRQKGNLIHQENVELYQKMEQIQKENAELQKKVYEARSTNEENVASNPSYKVRNGYDLHAPISLQLSQPQPQYSEPSAKAIKLGLQLH*

>Glyma15g06491.3   sequence type=predicted peptide   gene model=Glyma15g06491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTCSCNDFLHYDSMKSVIERYNKLKEEHHHLMNPASEAKFWQTEAASLRQQLQYLQECHRQLMGEELMGLGIKELQSLENQLEMSLKGVRMKKDQILTNEIEELRQKV*






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