Report for Sequence Feature Glyma15g06460
Feature Type: gene_model
Chromosome: Gm15
Start: 4561086
stop: 4563925
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g06460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G72680 AT
Annotation by Michelle Graham. TAIR10: cinnamyl-alcohol dehydrogenase | chr1:27359346-27360876 REVERSE LENGTH=355
SoyBase E_val: 0 ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0009627 GO-bp
Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance
SoyBase N/A ISS
GO:0009809 GO-bp
Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process
SoyBase N/A ISS
GO:0034976 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress
SoyBase N/A ISS
GO:0046482 GO-bp
Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0016616 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
SoyBase N/A ISS
GO:0048037 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cofactor binding
SoyBase N/A ISS
KOG0023
KOG
Alcohol dehydrogenase, class V
JGI ISS
PTHR11695 Panther
ALCOHOL DEHYDROGENASE RELATED
JGI ISS
PTHR11695:SF285 Panther
QUINONE OXIDOREDUCTASE-RELATED
JGI ISS
PF00107 PFAM
Zinc-binding dehydrogenase
JGI ISS
PF08240 PFAM
Alcohol dehydrogenase GroES-like domain
JGI ISS
UniRef100_G7IS81 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cinnamyl alcohol dehydrogenase n=1 Tax=Medicago truncatula RepID=G7IS81_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1ME20 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1ME20_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g06460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g06460
Paralog Evidence Comments
Glyma13g32830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g06460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g059500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g06460
Transcripts of Glyma15g06460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g06460.3 sequence type=transcript gene model=Glyma15g06460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TGCGCGTGGCTCCTAAGTCCTAAAAATGAGTGGAGAGGTTGGCCAAATACGAGGTAGGAGGAAAACGTGGTGTTGGGATAGAGAAGCGAAAGAAACCAAACCACAATGAAATAAAAAGCCCCTTTTGTAGAACAGTGATACATTCGCTTTCTATTTCTTCCTCATCTCGTACGTTTCGTGGATCCTTACTCAACGCAACACAACACAACACAGAAAAATTATGAGTTCCAAAGGTGTTGGTGAAGATTGCCTGGGATGGGCAGCAAGAGATGCATCCGGAGTTCTATCACCTTACAAATTCAGTCGCAGGACTCCTGGGAATGAAGATGTTCTTATTAAAATTACACACTGTGGTGTTTGCTTCGCCGATGTAGTTTGGACAAGGAATAAACATGGTGACTCAAAGTATCCTGTTGTGCCTGGTCACGAGATTGCTGGGATTGTGACAAAGGTTGGCTCCAATGTCCACCGTTTTAAGGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCATGTAGGGATTGTGAACATTGTAATGACAGAGAAGAAGTTCATTGTACCAAGGGATCTGTTTTCACTTTTAATGGTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCCAGTTACATAGTAGTCCATGAGAGGTACTGCTTCACGATACCAAAATCCTATGCATTGGCTTCAGCAGCTCCTTTGCTTTGTGCTGGAATTACAGTTTATTCACCGATGGTGCGCCACAAGATGAATCAACCTGGTAAATCTCTTGGAGTGATTGGTCTTGGTGGCCTCGGTCATATGGCAGTGAAATTTGGAAAGGCATTTGGTTTGAGTGTGACAGTTTTCAGCACTAGCATATCCAAGAAAGAGGAGGCACTGAGCCTGCTTGGTGCAGACAAATTTGTTGTTTCATCTAATCAAGAGGAAATGACGGCATTGGCTAAATCGTTGGACTTTATAATCGACACAGCATCTGGTGATCACCCGTTTGATCCTTACATGTCACTGTTGAAGACATATGGTGTTTTTGTCCTAGTTGGTTTCCCAAGTCAAGTCAAATTCAGCCCTGCAAGCCTTAATATAGGATCAAAGACTGTAGCCGGAAGTGTTACAGGTGGTACAAAAGATATACAGGAGATGATTGACTTCTGTGCTGCAAACGAGATTCACCCAAATATAGAGGTAATTCCAATCGAGTATGCCAATGAAGCTCTTGAGAGGCTCATCAATAGGGACGTCAAGTACCGGTTTGTGATAGATATTGAGAACTCCCTGAAAGAAAAATAAGTTGTACTTGTTGCCTCCTAAATTGGGCATGATTGGACTTCACCTTGTTCGATAAACAAGATGTTCATAGTTCATAATTACTTACATAGAGGTGATTTCAATGGAGTATGCGATGTAAATGTTGAATTTTCCTTAATTATTTTGGGAACTAATATTATTTGACTATTATAATATTTTGGATTATGAAATAATAATAATTATGGAAATTAATAGTGTTATTTTAATTTTAATAATAGATGTTGGTAGTCTGTGTCAAAAGTGTAAAGATTCAATCAAGA
Coding sequences of Glyma15g06460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g06460.2 sequence type=CDS gene model=Glyma15g06460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTTCCAAAGGTGTTGGTGAAGATTGCCTGGGATGGGCAGCAAGAGATGCATCCGGAGTTCTATCACCTTACAAATTCAGTCGCAGGACTCCTGGGAATGAAGATGTTCTTATTAAAATTACACACTGTGGTGTTTGCTTCGCCGATGTAGTTTGGACAAGGAATAAACATGGTGACTCAAAGTATCCTGTTGTGCCTGGTCACGAGATTGCTGGGATTGTGACAAAGGTTGGCTCCAATGTCCACCGTTTTAAGGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCATGTAGGGATTGTGAACATTGTAATGACAGAGAAGAAGTTCATTGTACCAAGGGATCTGTTTTCACTTTTAATGGTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCCAGTTACATAGTAGTCCATGAGAGGTACTGCTTCACGATACCAAAATCCTATGCATTGGCTTCAGCAGCTCCTTTGCTTTGTGCTGGAATTACAGTTTATTCACCGATGGTGCGCCACAAGATGAATCAACCTGGTAAATCTCTTGGAGTGATTGGTCTTGGTGGCCTCGGTCATATGGCAGTGAAATTTGGAAAGGCATTTGGTTTGAGTGTGACAGTTTTCAGCACTAGCATATCCAAGAAAGAGGAGGCACTGAGCCTGCTTGGTGCAGACAAATTTGTTGTTTCATCTAATCAAGAGGAAATGACGGCATTGGCTAAATCGTTGGACTTTATAATCGACACAGCATCTGGTGATCACCCGTTTGATCCTTACATGTCACTGTTGAAGACATATGGTGTTTTTGTCCTAGTTGGTTTCCCAAGTCAAGTCAAATTCAGCCCTGCAAGCCTTAATATAGGATCAAAGACTGTAGCCGGAAGTGTTACAGGTGGTACAAAAGATATACAGGAGATGATTGACTTCTGTGCTGCAAACGAGATTCACCCAAATATAGAGGTAATTCCAATCGAGTATGCCAATGAAGCTCTTGAGAGGCTCATCAATAGGGACGTCAAGTACCGGTTTGTGATAGATATTGAGAACTCCCTGAAAGAAAAATAA
>Glyma15g06460.3 sequence type=CDS gene model=Glyma15g06460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTTCCAAAGGTGTTGGTGAAGATTGCCTGGGATGGGCAGCAAGAGATGCATCCGGAGTTCTATCACCTTACAAATTCAGTCGCAGGACTCCTGGGAATGAAGATGTTCTTATTAAAATTACACACTGTGGTGTTTGCTTCGCCGATGTAGTTTGGACAAGGAATAAACATGGTGACTCAAAGTATCCTGTTGTGCCTGGTCACGAGATTGCTGGGATTGTGACAAAGGTTGGCTCCAATGTCCACCGTTTTAAGGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCATGTAGGGATTGTGAACATTGTAATGACAGAGAAGAAGTTCATTGTACCAAGGGATCTGTTTTCACTTTTAATGGTGTTGATTTTGATGGTACAATTACAAAAGGAGGATACTCCAGTTACATAGTAGTCCATGAGAGGTACTGCTTCACGATACCAAAATCCTATGCATTGGCTTCAGCAGCTCCTTTGCTTTGTGCTGGAATTACAGTTTATTCACCGATGGTGCGCCACAAGATGAATCAACCTGGTAAATCTCTTGGAGTGATTGGTCTTGGTGGCCTCGGTCATATGGCAGTGAAATTTGGAAAGGCATTTGGTTTGAGTGTGACAGTTTTCAGCACTAGCATATCCAAGAAAGAGGAGGCACTGAGCCTGCTTGGTGCAGACAAATTTGTTGTTTCATCTAATCAAGAGGAAATGACGGCATTGGCTAAATCGTTGGACTTTATAATCGACACAGCATCTGGTGATCACCCGTTTGATCCTTACATGTCACTGTTGAAGACATATGGTGTTTTTGTCCTAGTTGGTTTCCCAAGTCAAGTCAAATTCAGCCCTGCAAGCCTTAATATAGGATCAAAGACTGTAGCCGGAAGTGTTACAGGTGGTACAAAAGATATACAGGAGATGATTGACTTCTGTGCTGCAAACGAGATTCACCCAAATATAGAGGTAATTCCAATCGAGTATGCCAATGAAGCTCTTGAGAGGCTCATCAATAGGGACGTCAAGTACCGGTTTGTGATAGATATTGAGAACTCCCTGAAAGAAAAATAA
Predicted protein sequences of Glyma15g06460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g06460.2 sequence type=predicted peptide gene model=Glyma15g06460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSKGVGEDCLGWAARDASGVLSPYKFSRRTPGNEDVLIKITHCGVCFADVVWTRNKHGDSKYPVVPGHEIAGIVTKVGSNVHRFKVGDHVGVGTYVNSCRDCEHCNDREEVHCTKGSVFTFNGVDFDGTITKGGYSSYIVVHERYCFTIPKSYALASAAPLLCAGITVYSPMVRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALSLLGADKFVVSSNQEEMTALAKSLDFIIDTASGDHPFDPYMSLLKTYGVFVLVGFPSQVKFSPASLNIGSKTVAGSVTGGTKDIQEMIDFCAANEIHPNIEVIPIEYANEALERLINRDVKYRFVIDIENSLKEK*
>Glyma15g06460.3 sequence type=predicted peptide gene model=Glyma15g06460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSKGVGEDCLGWAARDASGVLSPYKFSRRTPGNEDVLIKITHCGVCFADVVWTRNKHGDSKYPVVPGHEIAGIVTKVGSNVHRFKVGDHVGVGTYVNSCRDCEHCNDREEVHCTKGSVFTFNGVDFDGTITKGGYSSYIVVHERYCFTIPKSYALASAAPLLCAGITVYSPMVRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALSLLGADKFVVSSNQEEMTALAKSLDFIIDTASGDHPFDPYMSLLKTYGVFVLVGFPSQVKFSPASLNIGSKTVAGSVTGGTKDIQEMIDFCAANEIHPNIEVIPIEYANEALERLINRDVKYRFVIDIENSLKEK*