Glyma15g06400 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g06400

Feature Type:	gene_model
Chromosome:	Gm15
Start:	4526888
stop:	4534354
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g06400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G14170	AT	Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 6B2 \| chr2:5977727-5981899 REVERSE LENGTH=607	SoyBase	E_val: 0	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0015996	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0004028	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity	SoyBase	N/A	ISS
GO:0004491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methylmalonate-semialdehyde dehydrogenase (acylating) activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG2450	KOG	Aldehyde dehydrogenase	JGI		ISS
PTHR11699	Panther	ALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PTHR11699:SF27	Panther	gb def: aldehyde dehydrogenase [nostoc sp. pcc 7120]	JGI		ISS
PF00171	PFAM	Aldehyde dehydrogenase family	JGI		ISS
UniRef100_G7IS75	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Medicago truncatula RepID=G7IS75_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1ME14	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1ME14_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g06400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g06400

Paralog	Evidence	Comments
Glyma13g32900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g06400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g058900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g06400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g06400

Limit To All Plant Sequences

>Glyma15g06400.3   sequence type=transcript   gene model=Glyma15g06400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGATAAGAATCTCAATCCACATGCACATATATATATATAAGCAACACTTGTCCCTCTTACAAGTACAACAGCAAGAGTGGCTTTTTGGTGAATTGATTGGTGATCCCGAGTTGGTTGAGTTCACTGCGCATAGACATGTTCCTTAATTTCCCCAAATATTAAAACAAGATTCAAAGCACGTCACTTACGTTCCCGCTTTCTGTTTAACAAGTGAAAAACTTGAACCTTTTGAGACCTCAGTTCTCTGCCATGGCAAATTCTCATTTATCAACACCTTCTGAGCTATTTTCAAGACAACATAAGCCCCCTAGGGTTCCAAATCTTATTGGGGGCAGTTTTCTGGACTCAAAATCGTTAACTTTCATTGATGTTATCAACCCTGCAACACAAGAGGTTGTTTCACAAGTTCCTTGCACCACAGATGAAGAGTTTAAAGCTGCGGTATCTGCAGCAAAGAAGGCATTTCCATCATGGCGAAAAACTCCAATCACAAAACGCCAACGTGTTATGTTGAAGTTCCAGGAGCTTATACGCAGAGATATGGATAAACTTGCCCTGAATGTGACCACTGAACAAGGAAAGACGTTAAAGGATGCACAAGGAGATGTTTTCCGTGGTTTAGAGGTGGTTGAACATGCTTGTGGGATGGCAACTCTACAAATGGGAGAATATGTTTCTGATGTATCAAGTGGAATTGATACTTACAGCATTAGAGAACCACTTGGTGTATGTGCTGGTATTTGTCCATTCAATTTTCCTGCAATGATTCCCTTGTGGATGTTCCCAGTGGCAGTTACATGTGGCAACACCTTTATTCTAAAACCATCAGAGAAAGTTCCAGGTGCCTCTGTAATGCTTGCAGAATTGGCAATGGAAGCTGGTTTGCCTGAGGGTGTCTTAAATATAGTTCATGGAACCCATGATATTGTGAATGCTATTTGTGACGATGATGACATCAAAGCCATATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATGCTAGAGCTGCAGCTAAAGGGAAACGTGTTCAGGCTAATATGGGGGCCAAAAATCATGCAGTTGTAATGCCTGATGCTAGTGTTGATGCTACTGTAAATGCTTTAGTTGCTGCAGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTCTCAGCACTGTTGTTTTTGTTGGAGACTCAAAACTGTGGGAAAGTAAACTTGTGGAGCATGCCAAAGCTCTTAAAGTAAATGTTGGAACTGAACCTGATGCAGACCTTGGTCCAGTCATTAGCAAACAGGCAAAGGAGCGAATACACCGATTAATTCAATCTGGGGTTGAAAGTGGTGCCAGACTAGTTCTTGATGGAAGAAATATAGTGGTCCCAGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTATCAGATGTCACCGCCAACATGGAGTGCTACAAGGAGGAGATCTTTGGACCAGTTCTTCTTCTCACGGAGGCTGATAACTTGGAAGAGGCCATAAACATTATCAATGAAAACAAGTATGGAAACGGTGCTTCTATATTTACCACATCTGGTGTGGCTGCAAGGAAATTTCAGACCGAGATTGAGGCGGGGCAGGTGGGCATCAATGTTCCTATTCCAGTTCCTTTGCCCTTTTTTTCATTTACTGGCAACAAGGCATCATTTGCTGGCGATCTTAATTTCTATGGTAAGGCAGGGGTTAACTTTTATACACAGATCAAAACAGTAACCCAGCAGTGGAAGGATTCGGCCAGCGAAAGCAAGATTAATTTGGCTATGCCAACCTCTCAAAAATCTTGAGTCCGAAGTTTATATTGCCTCTGAAACCTTTGGACTCTTATAAATCCTGTTAAACGATTGTCTTATATCCTTAGCAAATTCTTGTGTAAATAATACACCCTGATCCACCTATTTTTATAAAGTATTGTACTATGTTATGTTTTATTGGATGTGTGCTACTGTATTGTTCTCAGAATAAATGAATTTCTTGGGACTCGTAGATATAAAAATTGGAGGTGTAACAAGCAAAAAGGGCAGAAAAATTGAAGAAAAGAAGAAAATTTGAAGAAGGCCCAATCCAATACGCGCGCTCAGCGCGCGTCACGGGCTAAGCGGGCCAGGAAGTACACGCGCTAAGCGCAGAGTGTCACGCTAAGCGCGCCTACGAAGGCCCAAAGCCCACTTCAGCAGCTATAAATAGAGAGTCAGTCCAAGGGACAGAACACACACCACCACAGAACCCCCTCTCCTAGGGGTTTCATTTACTCTCTTTCTTTCTTTCACCTCCTTCTCATTCTCATTGTAAAGCCCTCGTGACCATGAGTGGCTAACCCCCTAGCTAGGGCCTGGCAGGCCTAAAAAGCCAATGATGTATGGAACATTTTAAGAGTTGTCAATAAAAAGAGGAATTCCCTCCAGGTTCT

Coding sequences of Glyma15g06400

Limit To All Plant Sequences

>Glyma15g06400.2   sequence type=CDS   gene model=Glyma15g06400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAATTCTCATTTATCAACACCTTCTGAGCTATTTTCAAGACAACATAAGCCCCCTAGGGTTCCAAATCTTATTGGGGGCAGTTTTCTGGACTCAAAATCGTTAACTTTCATTGATGTTATCAACCCTGCAACACAAGAGGTTGTTTCACAAGTTCCTTGCACCACAGATGAAGAGTTTAAAGCTGCGGTATCTGCAGCAAAGAAGGCATTTCCATCATGGCGAAAAACTCCAATCACAAAACGCCAACGTGTTATGTTGAAGTTCCAGGAGCTTATACGCAGAGATATGGATAAACTTGCCCTGAATGTGACCACTGAACAAGGAAAGACGTTAAAGGATGCACAAGGAGATGTTTTCCGTGGTTTAGAGGTGGTTGAACATGCTTGTGGGATGGCAACTCTACAAATGGGAGAATATGTTTCTGATGTATCAAGTGGAATTGATACTTACAGCATTAGAGAACCACTTGGTGTATGTGCTGGTATTTGTCCATTCAATTTTCCTGCAATGATTCCCTTGTGGATGTTCCCAGTGGCAGTTACATGTGGCAACACCTTTATTCTAAAACCATCAGAGAAAGTTCCAGGTGCCTCTGTAATGCTTGCAGAATTGGCAATGGAAGCTGGTTTGCCTGAGGGTGTCTTAAATATAGTTCATGGAACCCATGATATTGTGAATGCTATTTGTGACGATGATGACATCAAAGCCATATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATGCTAGAGCTGCAGCTAAAGGGAAACGTGTTCAGGCTAATATGGGGGCCAAAAATCATGCAGTTGTAATGCCTGATGCTAGTGTTGATGCTACTGTAAATGCTTTAGTTGCTGCAGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTCTCAGCACTGTTGTTTTTGTTGGAGACTCAAAACTGTGGGAAAGTAAACTTGTGGAGCATGCCAAAGCTCTTAAAGTAAATGTTGGAACTGAACCTGATGCAGACCTTGGTCCAGTCATTAGCAAACAGGCAAAGGAGCGAATACACCGATTAATTCAATCTGGGGTTGAAAGTGGTGCCAGACTAGTTCTTGATGGAAGAAATATAGTGGTCCCAGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTATCAGATGTCACCGCCAACATGGAGTGCTACAAGGAGGAGATCTTTGGACCAGTTCTTCTTCTCACGGAGGCTGATAACTTGGAAGAGGCCATAAACATTATCAATGAAAACAAGTATGGAAACGGTGCTTCTATATTTACCACATCTGGTGTGGCTGCAAGGAAATTTCAGACCGAGATTGAGGCGGGGCAGGTGGGCATCAATGTTCCTATTCCAGTTCCTTTGCCCTTTTTTTCATTTACTGGCAACAAGGCATCATTTGCTGGCGATCTTAATTTCTATGGTAAGGCAGGGGTTAACTTTTATACACAGATCAAAACAGTAACCCAGCAGTGGAAGGATTCGGCCAGCGAAAGCAAGATTAATTTGGCTATGCCAACCTCTCAAAAATCTTGA

>Glyma15g06400.3   sequence type=CDS   gene model=Glyma15g06400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAATTCTCATTTATCAACACCTTCTGAGCTATTTTCAAGACAACATAAGCCCCCTAGGGTTCCAAATCTTATTGGGGGCAGTTTTCTGGACTCAAAATCGTTAACTTTCATTGATGTTATCAACCCTGCAACACAAGAGGTTGTTTCACAAGTTCCTTGCACCACAGATGAAGAGTTTAAAGCTGCGGTATCTGCAGCAAAGAAGGCATTTCCATCATGGCGAAAAACTCCAATCACAAAACGCCAACGTGTTATGTTGAAGTTCCAGGAGCTTATACGCAGAGATATGGATAAACTTGCCCTGAATGTGACCACTGAACAAGGAAAGACGTTAAAGGATGCACAAGGAGATGTTTTCCGTGGTTTAGAGGTGGTTGAACATGCTTGTGGGATGGCAACTCTACAAATGGGAGAATATGTTTCTGATGTATCAAGTGGAATTGATACTTACAGCATTAGAGAACCACTTGGTGTATGTGCTGGTATTTGTCCATTCAATTTTCCTGCAATGATTCCCTTGTGGATGTTCCCAGTGGCAGTTACATGTGGCAACACCTTTATTCTAAAACCATCAGAGAAAGTTCCAGGTGCCTCTGTAATGCTTGCAGAATTGGCAATGGAAGCTGGTTTGCCTGAGGGTGTCTTAAATATAGTTCATGGAACCCATGATATTGTGAATGCTATTTGTGACGATGATGACATCAAAGCCATATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATGCTAGAGCTGCAGCTAAAGGGAAACGTGTTCAGGCTAATATGGGGGCCAAAAATCATGCAGTTGTAATGCCTGATGCTAGTGTTGATGCTACTGTAAATGCTTTAGTTGCTGCAGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTCTCAGCACTGTTGTTTTTGTTGGAGACTCAAAACTGTGGGAAAGTAAACTTGTGGAGCATGCCAAAGCTCTTAAAGTAAATGTTGGAACTGAACCTGATGCAGACCTTGGTCCAGTCATTAGCAAACAGGCAAAGGAGCGAATACACCGATTAATTCAATCTGGGGTTGAAAGTGGTGCCAGACTAGTTCTTGATGGAAGAAATATAGTGGTCCCAGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTATCAGATGTCACCGCCAACATGGAGTGCTACAAGGAGGAGATCTTTGGACCAGTTCTTCTTCTCACGGAGGCTGATAACTTGGAAGAGGCCATAAACATTATCAATGAAAACAAGTATGGAAACGGTGCTTCTATATTTACCACATCTGGTGTGGCTGCAAGGAAATTTCAGACCGAGATTGAGGCGGGGCAGGTGGGCATCAATGTTCCTATTCCAGTTCCTTTGCCCTTTTTTTCATTTACTGGCAACAAGGCATCATTTGCTGGCGATCTTAATTTCTATGGTAAGGCAGGGGTTAACTTTTATACACAGATCAAAACAGTAACCCAGCAGTGGAAGGATTCGGCCAGCGAAAGCAAGATTAATTTGGCTATGCCAACCTCTCAAAAATCTTGA

Predicted protein sequences of Glyma15g06400

Limit To All Plant Sequences

>Glyma15g06400.2   sequence type=predicted peptide   gene model=Glyma15g06400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANSHLSTPSELFSRQHKPPRVPNLIGGSFLDSKSLTFIDVINPATQEVVSQVPCTTDEEFKAAVSAAKKAFPSWRKTPITKRQRVMLKFQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSDVSSGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKVPGASVMLAELAMEAGLPEGVLNIVHGTHDIVNAICDDDDIKAISFVGSNVAGMHIYARAAAKGKRVQANMGAKNHAVVMPDASVDATVNALVAAGFGAAGQRCMALSTVVFVGDSKLWESKLVEHAKALKVNVGTEPDADLGPVISKQAKERIHRLIQSGVESGARLVLDGRNIVVPGYESGNFIGPTILSDVTANMECYKEEIFGPVLLLTEADNLEEAINIINENKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTVTQQWKDSASESKINLAMPTSQKS*

>Glyma15g06400.3   sequence type=predicted peptide   gene model=Glyma15g06400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANSHLSTPSELFSRQHKPPRVPNLIGGSFLDSKSLTFIDVINPATQEVVSQVPCTTDEEFKAAVSAAKKAFPSWRKTPITKRQRVMLKFQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSDVSSGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKVPGASVMLAELAMEAGLPEGVLNIVHGTHDIVNAICDDDDIKAISFVGSNVAGMHIYARAAAKGKRVQANMGAKNHAVVMPDASVDATVNALVAAGFGAAGQRCMALSTVVFVGDSKLWESKLVEHAKALKVNVGTEPDADLGPVISKQAKERIHRLIQSGVESGARLVLDGRNIVVPGYESGNFIGPTILSDVTANMECYKEEIFGPVLLLTEADNLEEAINIINENKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTVTQQWKDSASESKINLAMPTSQKS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain